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AT2G40650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PRP38 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PRP38 family protein; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT5G16780.1); Has 71927 Blast hits to 24591 proteins in 1125 species: Archae - 74; Bacteria - 21911; Metazoa - 26638; Fungi - 6334; Plants - 3978; Viruses - 317; Other Eukaryotes - 12675 (source: NCBI BLink).
Protein Annotations
BioGrid:3998eggNOG:ENOG410XQ3FeggNOG:KOG2889EMBL:AK228762EMBL:AY087415EMBL:CP002685EnsemblPlants:AT2G40650
EnsemblPlants:AT2G40650.1entrez:818660GeneID:818660Genevisible:Q8LB54GO:GO:0005681GO:GO:0006397GO:GO:0008380
Gramene:AT2G40650.1hmmpanther:PTHR23142HOGENOM:HOG000173665InParanoid:Q8LB54InterPro:IPR005037InterPro:IPR024767iPTMnet:Q8LB54
KEGG:ath:AT2G40650KO:K12849OMA:TFDSTEIPANTHER:PTHR23142PaxDb:Q8LB54Pfam:PF03371Pfam:PF12871
Pfam:Q8LB54PhylomeDB:Q8LB54PRIDE:Q8LB54PRO:PR:Q8LB54ProteinModelPortal:Q8LB54Proteomes:UP000006548RefSeq:NP_565937.1
STRING:3702.AT2G40650.1TAIR:AT2G40650UniGene:At.28044UniGene:At.72542UniProt:Q8LB54
Coordinates (TAIR10) chr2:-:16963588..16965596
Molecular Weight (calculated) 43174.50 Da
IEP (calculated) 8.09
GRAVY (calculated) -1.58
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRTDPLAK NIRGTNPQNL VEKIVRTKIY QHTFWKEQCF GLTAETLVDK AMELDHLGGT FGGSRKPTPF LCLILKMLQI QPEKEIVVEF IKNDDYKYVR
101: ILGAFYLRLT GTDVDVYRYL EPLYNDYRKV RQKLSDGKFS LTHVDEVIEE LLTKDYSCDI AMPRLKKRWT LEQNGLLEPR KSVLEDDFEE EEEKEENEGI
201: ADGSEDEMDQ RRKSPERERE RDRDRRRDSH RHRDRDYDRD YDMDRDHDRD YERERGHGRD RDRERDRDHY RERDRDRERG RDRERDRRDR ARRRSRSRSR
301: DRKRHETDDV RDREEPKKKK EKKEKMKEDG TDHPNPEIAE MNRLRASLGM KPLRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)