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AT2G40600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.708
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : appr-1-p processing enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
appr-1-p processing enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT1G69340.1); Has 3775 Blast hits to 3643 proteins in 1376 species: Archae - 162; Bacteria - 2045; Metazoa - 672; Fungi - 129; Plants - 171; Viruses - 376; Other Eukaryotes - 220 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2110eggNOG:KOG2633EMBL:BT000897EMBL:CP002685EnsemblPlants:AT2G40600EnsemblPlants:AT2G40600.1entrez:818655
GeneID:818655GO:GO:0005829Gramene:AT2G40600.1hmmpanther:PTHR11106HOGENOM:HOG000086960InterPro:IPR002589KEGG:ath:AT2G40600
OMA:DEGAVFNPfam:PF01661Pfscan:PS51154PhylomeDB:Q8H114PROSITE:PS51154Proteomes:UP000006548RefSeq:NP_030605.2
SMART:SM00506SMR:Q8H114STRING:3702.AT2G40600.1SUPFAM:SSF52949TAIR:AT2G40600UniGene:At.23400UniProt:Q8H114
Coordinates (TAIR10) chr2:-:16947012..16948537
Molecular Weight (calculated) 27479.40 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.07
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRQWLTSGL SSLPGLLHSS STILRPTSSS SSRASLISFA VNNFHTIASS SSTLSSRLTT VSSSMASGDE GAVFNLSDSS LLKILKGDIT KWSVDSSSDA
101: IVNPANERML GGGGADGAIH RAAGPQLRAA CYEVPEVRPG VRCPTGEARI TPGFNLPASR VIHTVGPIYD SDVNPQESLT NSYKNSLRVA KENNIKYIAF
201: PAISCGIYGY PFDEAAAIGI STIKQFSTDF KEVHFVLFAD DIFSVWVNKA KEVLQKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)