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AT2G40570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : initiator tRNA phosphoribosyl transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
initiator tRNA phosphoribosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring pentosyl groups, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiator tRNA phosphoribosyl transferase (InterPro:IPR007306), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), tRNA A64-2'-O-ribosylphosphate transferase, RIT1 (InterPro:IPR016519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZJFFeggNOG:KOG2634EMBL:AK228018EMBL:BT008321
EMBL:CP002685EnsemblPlants:AT2G40570EnsemblPlants:AT2G40570.1entrez:818652
ExpressionAtlas:Q7Y230Gene3D:3.90.190.10GeneID:818652GO:GO:0019988
GO:GO:0043399Gramene:AT2G40570.1hmmpanther:PTHR31811hmmpanther:PTHR31811:SF0
HOGENOM:HOG000174281InterPro:IPR007306InterPro:IPR029021InterPro:IPR033421
InterPro:IPR033449ncoils:CoilOMA:SEFSWNYPfam:PF04179
Pfam:PF17184PhylomeDB:Q7Y230PIRSF:PIRSF007747Proteomes:UP000006548
RefSeq:NP_181589.3STRING:3702.AT2G40570.1SUPFAM:SSF52799TAIR:AT2G40570
UniGene:At.42969UniProt:Q7Y230
Coordinates (TAIR10) chr2:+:16941066..16943288
Molecular Weight (calculated) 58711.80 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.32
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAKSEEPMM TTRDSIYRAA RNIKRRDNSL YNALRSIYQD SIFVHEISLL WPKLPLVANL RCGLWYSEKF DATCYFKSTD GHTNNLSFNT SRLNLHLPLL
101: AGEKGGCIII DSTRKGKRFP DSMSKTIPMW SCVVNRSIFN HWNRLCNIDA GLTSDDDGDN IRKLLDKWDC SLHLPLWVSN TERASIEARL DEWTRELDES
201: GADIASLASC LRKPLRPLWV SQKTVIWLNE VPEHDSWDFT PLILVSASAS GELQNRTSSE FSWNYIPGAG DDEESWARGL SPNVFWTHVD DLIHSGPDLC
301: NQKVAEIVEN DRVYRAHRGQ EAPQVVVKCS KSNGGVNHAK SDEILCLSAQ IPKVDEERLV FWLSSTNLAV GASQVACKET SIDCILNCDQ NPISVPVSYL
401: EEHLHLPMKG SKFDRFSISR NLPPAVNFAK LKMSSGKKVL VCCQDGEDIS ICVCLAILMS LFNEEGAFDG GKSFEEKSIT KMDMRRMLIF ICKYAVNARP
501: SRGNLKQVFG FLSSHRENSD E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)