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AT2G40550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : E2F target gene 1
Curator
Summary (TAIR10)
Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.
Computational
Description (TAIR10)
E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:3988eggNOG:ENOG410XNU0eggNOG:KOG2545EMBL:AC002336EMBL:AK227836EMBL:BT022032EMBL:CP002685
EnsemblPlants:AT2G40550EnsemblPlants:AT2G40550.1entrez:818650GeneID:818650Genevisible:Q501D5GO:GO:0005634GO:GO:0006260
GO:GO:0006301GO:GO:0007062GO:GO:0007067GO:GO:0009941GO:GO:0042555GO:GO:0051301Gramene:AT2G40550.1
hmmpanther:PTHR13489hmmpanther:PTHR13489:SF0HOGENOM:HOG000237536InParanoid:Q501D5IntAct:Q501D5InterPro:IPR019140KEGG:ath:AT2G40550
MINT:MINT-6799271OMA:LTMGRLMPANTHER:PTHR13489PaxDb:Q501D5Pfam:PF09739Pfam:Q501D5PhylomeDB:Q501D5
PIR:H84830PRIDE:Q501D5PRO:PR:Q501D5ProteinModelPortal:Q501D5Proteomes:UP000006548RefSeq:NP_181587.2STRING:3702.AT2G40550.1
TAIR:AT2G40550tair10-symbols:ETG1UniGene:At.37033UniProt:Q501D5
Coordinates (TAIR10) chr2:+:16934927..16938033
Molecular Weight (calculated) 65758.60 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.27
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGPAYDCLT NPLGAVRFSF VNALSSGYDP ASSVGKDWGV VDLFRHYFSD ESAISQVPIL DSSSIKWVQP KTLVRFRGMI QDMLGNEFYA GAYKDDSTWR
101: TNKYSDVSQF PEGSSTEIQV WERRLLYCVP VPGKNQWTEC SSQELKNRFL DLTGQNREKR VRVDEEMTDS MDSSTLEAGR NGSPFKKMKV GEATSSASES
201: QVPQTSGIPP ATSADSLPCL VKIYDSPESD LKLNDVVEFL GVLTFDPIVM MDTDTLDENS DALSEAESVQ MPSGKVPRLH CLIHRKLETQ HFLHGSSLLP
301: EPKSPQIFKE IRESLMKYLT GLLGNDHIAA QFLLLHLLSK VHGRVDNVAV GKLSLNLIHL NKESMSIFGT QLSGALKSLL PFTQSIPLTI EYLNTASFGP
401: KKDYGINRLM PGVLQIADGT HLILDETELQ PGTLNSVGVE NANLLKNLLE CQKVEYDFQY YKMEMATDVQ MLIFSEGKSN IMPADLVLPL QPSQVNSLEV
501: ITPETAETWR CYLATCKSLS HSIGQELQQV VENDLVAARQ TDRSLGSQDL SRLLTMARMM SVSYGETTLS LEHWQMVLEL ERLRKERLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)