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AT2G40480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.863
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF827)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G56270.1); Has 1092 Blast hits to 990 proteins in 183 species: Archae - 2; Bacteria - 84; Metazoa - 493; Fungi - 73; Plants - 232; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink).
Protein Annotations
BioGrid:3981eggNOG:ENOG410IJN6eggNOG:ENOG410YE8YEMBL:AC002336EMBL:AY735595EMBL:CP002685EnsemblPlants:AT2G40480
EnsemblPlants:AT2G40480.1entrez:818643GeneID:818643Genevisible:Q5XVC7Gramene:AT2G40480.1hmmpanther:PTHR32054hmmpanther:PTHR32054:SF13
HOGENOM:HOG000240040InParanoid:Q5XVC7InterPro:IPR008545KEGG:ath:AT2G40480ncoils:CoilOMA:MESHTERPaxDb:Q5XVC7
Pfam:PF05701Pfam:Q5XVC7PhylomeDB:Q5XVC7PIR:A84830PRIDE:Q5XVC7PRO:PR:Q5XVC7ProteinModelPortal:Q5XVC7
Proteomes:UP000006548RefSeq:NP_181580.2STRING:3702.AT2G40480.1TAIR:AT2G40480UniGene:At.50982UniProt:Q5XVC7
Coordinates (TAIR10) chr2:+:16910425..16912444
Molecular Weight (calculated) 58483.90 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.67
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)