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AT2G40435.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYQ6eggNOG:ENOG410YJUZEMBL:AC002336EMBL:AC007020EMBL:AK220685EMBL:AY227635EMBL:AY649272
EMBL:CP002685EnsemblPlants:AT2G40435EnsemblPlants:AT2G40435.1entrez:818637GeneID:818637Gramene:AT2G40435.1hmmpanther:PTHR31945
hmmpanther:PTHR31945:SF21HOGENOM:HOG000241360KEGG:ath:AT2G40435ncoils:CoilOMA:TASCADSPhylomeDB:Q8RUZ5Proteomes:UP000006548
RefSeq:NP_565932.1TAIR:AT2G40435UniGene:At.37051UniProt:Q8RUZ5
Coordinates (TAIR10) chr2:+:16887048..16888407
Molecular Weight (calculated) 17569.60 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.60
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSREQKRGS LQEKFQLLRS ITNSHAENDT SIIMDASKYI QKLKQKVERF NQDPTAEQSS SEPTDPKTPM VTVETLDKGF MINVFSGKNQ PGMLVSVLEA
101: FEDIGLNVLE ARASCTDSFS LHAMGLENED GENMDAEAVK QAVTDAIRSW GEINDPQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)