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AT2G40380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.B2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.B2 (PRA1.B2); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B1 (TAIR:AT3G56110.2); Has 573 Blast hits to 573 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 100; Plants - 320; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:3969eggNOG:COG5130eggNOG:KOG3142EMBL:AC007020
EMBL:AK175728EMBL:AK176230EMBL:BT010639EMBL:CP002685
EnsemblPlants:AT2G40380EnsemblPlants:AT2G40380.1entrez:818631GeneID:818631
GO:GO:0005768GO:GO:0005783GO:GO:0005794GO:GO:0005802
GO:GO:0010008GO:GO:0016021GO:GO:0016192Gramene:AT2G40380.1
hmmpanther:PTHR19317hmmpanther:PTHR19317:SF9HOGENOM:HOG000238420InParanoid:Q9SIY7
IntAct:Q9SIY7InterPro:IPR004895KEGG:ath:AT2G40380OMA:IFRASDQ
PaxDb:Q9SIY7Pfam:PF03208Pfam:Q9SIY7PhylomeDB:Q9SIY7
PIR:G84828PRIDE:Q9SIY7PRO:PR:Q9SIY7ProteinModelPortal:Q9SIY7
Proteomes:UP000006548RefSeq:NP_181569.1STRING:3702.AT2G40380.1TAIR:AT2G40380
tair10-symbols:PRA1.B2TMHMM:TMhelixUniGene:At.28021UniGene:At.71873
UniProt:Q9SIY7
Coordinates (TAIR10) chr2:-:16864734..16865375
Molecular Weight (calculated) 23160.10 Da
IEP (calculated) 9.75
GRAVY (calculated) 0.46
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)