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AT2G40260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G38300.1); Has 1902 Blast hits to 1885 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 17; Plants - 1623; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX1YeggNOG:ENOG410YN97EMBL:AC007020EMBL:CP002685EnsemblPlants:AT2G40260EnsemblPlants:AT2G40260.1entrez:818618
Gene3D:1.10.10.60GeneID:818618GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT2G40260.1hmmpanther:PTHR31314HOGENOM:HOG000090767InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT2G40260OMA:GSWTDHRPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SIZ5PIR:C84827PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_181555.1SMR:Q9SIZ5STRING:3702.AT2G40260.1SUPFAM:SSF46689TAIR:AT2G40260TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.53083UniProt:Q9SIZ5
Coordinates (TAIR10) chr2:-:16816818..16818473
Molecular Weight (calculated) 46234.20 Da
IEP (calculated) 6.77
GRAVY (calculated) -1.07
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)