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AT2G40220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Acts downstream of GUN1 in retrograde signaling. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.
Computational
Description (TAIR10)
ABA INSENSITIVE 4 (ABI4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G57600.1); Has 5833 Blast hits to 5755 proteins in 285 species: Archae - 0; Bacteria - 4; Metazoa - 56; Fungi - 8; Plants - 5653; Viruses - 6; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
BioGrid:3952eggNOG:ENOG410J1R6eggNOG:ENOG410YPH3EMBL:AF040959
EMBL:AF085279EMBL:AY560890EMBL:CP002685EMBL:DQ446612
EMBL:DQ653050EnsemblPlants:AT2G40220EnsemblPlants:AT2G40220.1entrez:818614
Gene3D:3.30.730.10GeneID:818614Genevisible:A0MES8GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005983GO:GO:0006351
GO:GO:0006952GO:GO:0006970GO:GO:0009414GO:GO:0009738
GO:GO:0009744GO:GO:0009749GO:GO:0009873GO:GO:0010119
GO:GO:0010182GO:GO:0010353GO:GO:0010449GO:GO:0010896
GO:GO:0031930GO:GO:0032880GO:GO:0044212GO:GO:0045893
GO:GO:0048316GO:GO:0048527Gramene:AT2G40220.1hmmpanther:PTHR31241
hmmpanther:PTHR31241:SF7HOGENOM:HOG000033770InParanoid:A0MES8InterPro:IPR001471
InterPro:IPR016177InterPro:IPR033266KEGG:ath:AT2G40220KO:K09286
OMA:STSFHHEPANTHER:PTHR31241:SF7PaxDb:A0MES8Pfam:A0MES8
Pfam:PF00847Pfscan:PS51032PhylomeDB:A0MES8PIR:G84826
PRIDE:A0MES8PRINTS:PR00367PRO:PR:A0MES8PROSITE:PS51032
ProteinModelPortal:A0MES8Proteomes:UP000006548RefSeq:NP_181551.1SMART:SM00380
SMR:A0MES8STRING:3702.AT2G40220.1SUPFAM:SSF54171TAIR:AT2G40220
tair10-symbols:ABI4tair10-symbols:ATABI4tair10-symbols:GIN6tair10-symbols:ISI3
tair10-symbols:SAN5tair10-symbols:SIS5tair10-symbols:SUN6UniGene:At.50594
UniProt:A0MES8
Coordinates (TAIR10) chr2:-:16796599..16797585
Molecular Weight (calculated) 35672.90 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.72
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)