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AT2G40200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56770.1); Has 2073 Blast hits to 2066 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 255; Fungi - 6; Plants - 1802; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0FQeggNOG:ENOG410ZM5CEMBL:AB493583EnsemblPlants:AT2G40200
EnsemblPlants:AT2G40200.1entrez:818611ExpressionAtlas:C0SV80Gene3D:4.10.280.10
GeneID:818611Gramene:AT2G40200.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF181
InterPro:IPR011598KEGG:ath:AT2G40200OMA:DTRQMDKPaxDb:C0SV80
Pfam:PF00010Pfam:Q9XEF0Pfscan:PS50888PhylomeDB:C0SV80
PRIDE:C0SV80PROSITE:PS50888ProteinModelPortal:C0SV80RefSeq:NP_181549.1
SMART:SM00353SMR:C0SV80STRING:3702.AT2G40200.1SUPFAM:SSF47459
TAIR:AT2G40200UniGene:At.37090UniProt:C0SV80UniProt:Q9XEF0
Coordinates (TAIR10) chr2:+:16791098..16792027
Molecular Weight (calculated) 28416.20 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.50
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)