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AT2G40080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1313)
Curator
Summary (TAIR10)
Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.
Computational
Description (TAIR10)
EARLY FLOWERING 4 (ELF4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 1 (TAIR:AT2G29950.1); Has 150 Blast hits to 149 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:3934eggNOG:ENOG410J0C4eggNOG:ENOG410Y56ZEMBL:AF002109EMBL:AY035183EMBL:AY062963EMBL:AY088748
EMBL:CP002685EnsemblPlants:AT2G40080EnsemblPlants:AT2G40080.1entrez:818596GeneID:818596Genevisible:O04211GO:GO:0005634
GO:GO:0009585GO:GO:0009648GO:GO:0009649GO:GO:0009908GO:GO:0009909GO:GO:0010017GO:GO:0010114
GO:GO:0042753GO:GO:0042803GO:GO:0048511GO:GO:0048573GO:GO:0080167Gramene:AT2G40080.1hmmpanther:PTHR33469
hmmpanther:PTHR33469:SF5HOGENOM:HOG000240133InParanoid:O04211InterPro:IPR009741iPTMnet:O04211KEGG:ath:AT2G40080OMA:HGGKNGH
PaxDb:O04211Pfam:O04211Pfam:PF07011PhylomeDB:O04211PIR:A84825PRIDE:O04211PRO:PR:O04211
Proteomes:UP000006548RefSeq:NP_565922.1STRING:3702.AT2G40080.1TAIR:AT2G40080tair10-symbols:ELF4UniGene:At.14672UniGene:At.67850
UniProt:O04211
Coordinates (TAIR10) chr2:-:16734545..16734880
Molecular Weight (calculated) 12376.30 Da
IEP (calculated) 9.16
GRAVY (calculated) -1.05
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRNGETKRR RNVAEEAEQG EDPAMWENLD RNFRQVQSVL DRNRSLIQQV NDNHQSRMAD NMSKNVALIQ ELNGNISKVV NMYSDLNTSF SSGFHGGKNG
101: HDGGGAAGTR A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)