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AT2G40060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23975899 (2013): plasma membrane
  • PMID:23424247 (2013): Golgi trans-Golgi network early endosome
  • PMID:23424247 (2013): plasma membrane
  • PMID:22010034 (2011): plasma membrane
  • PMID:18502847 (2008): cytosol
  • PMID:18502847 (2008): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Clathrin light chain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT3G51890.1); Has 548 Blast hits to 536 proteins in 149 species: Archae - 2; Bacteria - 80; Metazoa - 210; Fungi - 41; Plants - 105; Viruses - 2; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
BioGrid:3932DIP:DIP-59589NeggNOG:ENOG410IZR8eggNOG:ENOG410YMJVEMBL:AF002109EMBL:AK226476EMBL:AY088269
EMBL:AY092995EMBL:AY114610EMBL:CP002685EnsemblPlants:AT2G40060EnsemblPlants:AT2G40060.1entrez:818594GeneID:818594
Genevisible:O04209GO:GO:0005198GO:GO:0005856GO:GO:0005886GO:GO:0006886GO:GO:0009504GO:GO:0009524
GO:GO:0009941GO:GO:0030125GO:GO:0030130GO:GO:0030132GO:GO:0032050GO:GO:0072583Gramene:AT2G40060.1
hmmpanther:PTHR10639hmmpanther:PTHR10639:SF10HOGENOM:HOG000241126InParanoid:O04209IntAct:O04209InterPro:IPR000996iPTMnet:O04209
KEGG:ath:AT2G40060ncoils:CoilOMA:VPTIEKRPANTHER:PTHR10639PaxDb:O04209Pfam:O04209Pfam:PF01086
PhylomeDB:O04209PIR:G84824PRIDE:O04209PRO:PR:O04209ProteinModelPortal:O04209Proteomes:UP000006548RefSeq:NP_565921.1
STRING:3702.AT2G40060.1TAIR:AT2G40060UniGene:At.22455UniGene:At.67955UniProt:O04209
Coordinates (TAIR10) chr2:+:16726564..16728001
Molecular Weight (calculated) 28838.40 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.92
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)