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AT2G39970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24130194 (2013): peroxisome
  • PMID:23750852 (2013): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial substrate carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, peroxisomal membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: folate transporter 1 (TAIR:AT5G66380.1); Has 16603 Blast hits to 11434 proteins in 397 species: Archae - 0; Bacteria - 4; Metazoa - 7348; Fungi - 4678; Plants - 2931; Viruses - 0; Other Eukaryotes - 1642 (source: NCBI BLink).
Protein Annotations
BioGrid:3922eggNOG:ENOG410ZNC0eggNOG:KOG0769EMBL:AB047148
EMBL:AF002109EMBL:AY039858EMBL:AY088311EMBL:BT003020
EMBL:CP002685EnsemblPlants:AT2G39970EnsemblPlants:AT2G39970.1entrez:818584
Gene3D:1.50.40.10GeneID:818584Genevisible:O04200GO:GO:0003735
GO:GO:0005774GO:GO:0005777GO:GO:0006412GO:GO:0009514
GO:GO:0015297GO:GO:0016021GO:GO:0043132GO:GO:0044375
GO:GO:0046861Gramene:AT2G39970.1hmmpanther:PTHR24089hmmpanther:PTHR24089:SF368
HOGENOM:HOG000159426InParanoid:O04200InterPro:IPR018108InterPro:IPR023395
iPTMnet:O04200KEGG:ath:AT2G39970KO:K13354OMA:NGAYYYF
PaxDb:O04200Pfam:O04200Pfam:PF00153Pfscan:PS50920
PhylomeDB:O04200PIR:F84823PRIDE:O04200PRO:PR:O04200
ProMEX:O04200PROSITE:PS50920ProteinModelPortal:O04200Proteomes:UP000006548
Reactome:R-ATH-389599RefSeq:NP_181526.1SMR:O04200STRING:3702.AT2G39970.1
SUPFAM:0048588SUPFAM:SSF103506TAIR:AT2G39970TCDB:2.A.29.6.2
TMHMM:TMhelixUniGene:At.14666UniProt:O04200
Coordinates (TAIR10) chr2:-:16684026..16686392
Molecular Weight (calculated) 36215.50 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.02
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDALINGLA GAGGGIIAQL LTYPLQTVNT RQQTERDLKR EKRKLGTIEH MCQVVKQEGW ERLYGGLAPS LAGTAASQGV YYYFYQVFRN RAEATALARK
101: KKGLGDGSVG MFASLLVAAF AGSVNVLMTN PIWVIVTRMQ THRKMTKDQT AAPESPSSNA EALVAVEPRP YGTFNTIREV YDEAGITGFW KGVIPTLIMV
201: SNPSMQFMLY ETMLTKLKKK RALKGSNNVT ALETFLLGAV AKLGATVTTY PLLVVKSRLQ AKQVTTGDKR QQYKGTLDAI LKMIRYEGLY GFYKGMSTKI
301: VQSVLAAAVL FMIKEELVKG AKLLLSNATS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)