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AT2G39920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.679
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD superfamily, subfamily IIIB acid phosphatase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 356 Blast hits to 355 proteins in 40 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXNXeggNOG:ENOG411181TEMBL:AF002109EMBL:AY087290EMBL:BT025037EMBL:CP002685EnsemblPlants:AT2G39920
EnsemblPlants:AT2G39920.1EnsemblPlants:AT2G39920.3entrez:818579ExpressionAtlas:O04195Gene3D:3.40.50.1000GeneID:818579Genevisible:O04195
GO:GO:0016021GO:GO:0046686hmmpanther:PTHR31284hmmpanther:PTHR31284:SF12HOGENOM:HOG000155209InParanoid:O04195InterPro:IPR005519
InterPro:IPR023214OMA:AHQMEREPaxDb:O04195Pfam:O04195Pfam:PF03767PhylomeDB:O04195PIR:A84823
PRIDE:O04195PRO:PR:O04195ProteinModelPortal:O04195Proteomes:UP000006548RefSeq:NP_001189717.1RefSeq:NP_565918.1SMR:O04195
STRING:3702.AT2G39920.1TAIR:AT2G39920TMHMM:TMhelixUniGene:At.37118UniGene:At.37119UniProt:O04195
Coordinates (TAIR10) chr2:-:16663201..16664305
Molecular Weight (calculated) 32673.30 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.28
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAYTHPMER ELSGLSSRGN SELGSRYSIE SGCYMTSLAA SIFIASLVTF GVLMITLLIA LSTMLQSCEN RNIAIVEAQR LDESFGYCKI LSLHSQLNSL
101: DEESELPLLC RDVALHRIKQ GIYLRELNFT IQMALTYFQT IKPMNDNCDV VVIDIDDTNL LEQDSYYMKY IEEAKHQKSI LILALYSKLR SQGYSMVLLS
201: RRPETERNAT IEQLKSRGYS DWSHLIMSRE DTRQKEELER GHRVIGVIGN HMDVLRGQWN WQSKRLFKLP SLTYDDVLDY NER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)