AT2G39910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF2454 (InterPro:IPR018870); Has 85 Blast hits to 84 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16660604..16662886 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49750.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFTKENCQF RKMLSTSSDL HGRLLRLSEP IAEILRRTQY TPQESSKVST KDILLSLLPN TSSSRLANEE SIKSLALACA LLASSRSSTH ELLSWIPENL 101: SVMGESTFWE ISRDCFSDFS SNSNAEKLVE LVEDSEKIEM LPIVLPELKD GIEKSSLGKG SDAEDVSAAM ARTPVGYAIL AAHQLRWFVT QVKKPNLVKF 201: CNLVVPCALT ALDHWSPEVK GQGMITFVHL AKNVSSGDLG LYGDVVLDAC CQNIASDDEI WIHVVELSVL LVTKIHPNNP RSPWYEKIMN EMLGHLERQP 301: RNKERRITWL RFVEPLLNSL GLFLLAHFRR IFPLFFQWMH SDDAETVLLV LERLETVVRL TWIRHSPVFP RLVDELVSLY KESSMRKDRD DIRPLILRIL 401: MLLRQCKGLR FESAWSQYQE DPNLSTVSQH IWTSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)