suba logo
AT2G39870.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNXIeggNOG:ENOG4111DC8EMBL:AC003000EMBL:AF002109EMBL:AF370134EMBL:AY065038EMBL:AY113855
EMBL:CP002685EnsemblPlants:AT2G39870EnsemblPlants:AT2G39870.1entrez:818574GeneID:818574Gramene:AT2G39870.1hmmpanther:PTHR33356
hmmpanther:PTHR33356:SF4HOGENOM:HOG000238467KEGG:ath:AT2G39870OMA:NAWDVISPhylomeDB:O04191PIR:T01016Proteomes:UP000006548
RefSeq:NP_565916.1TAIR:AT2G39870UniGene:At.24826UniProt:O04191
Coordinates (TAIR10) chr2:+:16643697..16644950
Molecular Weight (calculated) 36703.20 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.64
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLLPPHLS VNLPTMEKTT SSELTPTRLG FPNEFPYEFD SPSFSPGFTS PGDSTETEDE SSDDEEDFLA GLTRRLAPST QRLPSPLFKS EEKRQVAATS
101: PQSTLSGLGS FSNSGSRSPI LPSPPAPTSS FRRDNAWDVI SAAAGEVARL KLGSYEPHHL PLQTPESLLR RQNAAIHAEL QHQRLIEQMW LCSAQSRFKL
201: SENRIPRRVV NEEGLFENPR YVRRNNPTWL PPQQAAAPLK RPSAGTGVFL PRRYPSAAPS DSLKTPVNTP AMLQPKVKPQ NLNFDEFTNI VGPRRSQFDY
301: ECMLARSTVL ARQGNFRAVS GGGLPQDWMY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)