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AT2G39760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.802
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB/POZ/MATH-domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 6744 Blast hits to 6554 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 4817; Fungi - 136; Plants - 1477; Viruses - 34; Other Eukaryotes - 280 (source: NCBI BLink).
Protein Annotations
BioGrid:3899eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AC003000EMBL:AK316691EMBL:AY088598EMBL:AY128315
EMBL:BT000044EMBL:CP002685EnsemblPlants:AT2G39760EnsemblPlants:AT2G39760.1entrez:818561Gene3D:2.60.210.10GeneID:818561
Genevisible:O22286GO:GO:0005634GO:GO:0005829GO:GO:0006970GO:GO:0016567GO:GO:0031396GO:GO:0042802
GO:GO:0071472hmmpanther:PTHR24411hmmpanther:PTHR24411:SF35HOGENOM:HOG000220921InParanoid:O22286IntAct:O22286InterPro:IPR000210
InterPro:IPR002083InterPro:IPR008974InterPro:IPR011333KEGG:ath:AT2G39760KO:K10523MINT:MINT-7262735OMA:VGCDIAF
PaxDb:O22286Pfam:O22286Pfam:PF00651Pfam:PF00917Pfscan:PS50097Pfscan:PS50144PhylomeDB:O22286
PIR:T01006PRIDE:O22286PRO:PR:O22286PROSITE:PS50097PROSITE:PS50144ProteinModelPortal:O22286Proteomes:UP000006548
Reactome:R-ATH-5632684RefSeq:NP_001031516.1RefSeq:NP_030522.1SMART:SM00061SMART:SM00225SMR:O22286STRING:3702.AT2G39760.1
SUPFAM:SSF49599SUPFAM:SSF54695TAIR:AT2G39760tair10-symbols:ATBPM3tair10-symbols:BPM3UniGene:At.37134UniPathway:UPA00143
UniProt:O22286
Coordinates (TAIR10) chr2:+:16583213..16585983
Molecular Weight (calculated) 44892.80 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.09
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)