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AT2G39730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rubisco activase
Curator
Summary (TAIR10)
Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.
Computational
Description (TAIR10)
rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2406 Blast hits to 2358 proteins in 526 species: Archae - 328; Bacteria - 489; Metazoa - 254; Fungi - 429; Plants - 406; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
Protein Annotations
BioGrid:3896eggNOG:COG1222eggNOG:KOG0651EMBL:AC003000EMBL:AF325049EMBL:AY052703EMBL:AY056108
EMBL:AY088487EMBL:BT000710EMBL:CP002685EMBL:M86720EMBL:X14212EnsemblPlants:AT2G39730EnsemblPlants:AT2G39730.1
entrez:818558ExpressionAtlas:P10896Gene3D:3.40.50.300GeneID:818558Genevisible:P10896GO:GO:0005524GO:GO:0005618
GO:GO:0005634GO:GO:0009409GO:GO:0009416GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0009579
GO:GO:0009753GO:GO:0009941GO:GO:0010150GO:GO:0010287GO:GO:0010319GO:GO:0016020GO:GO:0030234
GO:GO:0042742GO:GO:0043085GO:GO:0043531GO:GO:0046863GO:GO:0048046GO:GO:0050790hmmpanther:PTHR32429
hmmpanther:PTHR32429:SF12HOGENOM:HOG000243931InParanoid:P10896IntAct:P10896InterPro:IPR003959InterPro:IPR027417iPTMnet:P10896
KEGG:ath:AT2G39730OMA:DFDNTMDPaxDb:P10896PDB:4W5WPDBsum:4W5WPfam:P10896Pfam:PF00004
PhylomeDB:P10896PIR:S04048PIR:T01002PIR:T01003PRIDE:P10896PRO:PR:P10896ProteinModelPortal:P10896
Proteomes:UP000006548RefSeq:NP_565913.1RefSeq:NP_850320.1SMR:P10896STRING:3702.AT2G39730.1SUPFAM:SSF52540SWISS-2DPAGE:P10896
TAIR:AT2G39730tair10-symbols:RCAUniGene:At.25263UniGene:At.25299UniGene:At.25319UniGene:At.47493UniProt:P10896
World-2DPAGE:0003:P10896
Coordinates (TAIR10) chr2:-:16570951..16573345
Molecular Weight (calculated) 51984.20 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.31
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)