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AT2G39580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ07eggNOG:KOG4839EMBL:CP002685EnsemblPlants:AT2G39580EnsemblPlants:AT2G39580.1entrez:818543GeneID:818543
Gramene:AT2G39580.1hmmpanther:PTHR21563InParanoid:F4IVX7InterPro:IPR019607iPTMnet:F4IVX7KEGG:ath:AT2G39580ncoils:Coil
OMA:DYMEDDLPaxDb:F4IVX7Pfam:PF10650PRIDE:F4IVX7ProteinModelPortal:F4IVX7Proteomes:UP000006548RefSeq:NP_181490.5
STRING:3702.AT2G39580.1TAIR:AT2G39580UniGene:At.43594UniProt:F4IVX7
Coordinates (TAIR10) chr2:+:16510540..16516948
Molecular Weight (calculated) 175863.00 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.47
Length 1577 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTTPITGKNS PVTGKEEGEL STSDDEVQPM QTSTRSPLTE HISANTNIQR RQAGNGGSFI KPSDATPTKL TNPGGRIFET KQAIAAIHGK KFPVRGNNSN
0101: LVINFSDDDS GSESDCKGRT QTSKIQPKGT ISGNRNPSTF SQTKLKGPRQ IDIRAITKKA LSTSTFSHAA TSKVSNLSFA KEMKSNKYIH SSERTVSKDA
0201: QRPEQIVESN SNKLQDLKQQ IALRESELKL KAAQPKKDAV NPKITPARRV SIISDDTRHL EPNEPPKKRL KVSGIDTSQP VIDYRVAASA AAPMNAPDIR
0301: KSLLPGVNAN SSCKHLGSKS DEIVPPVIPQ HTVEGNTSSS VLQKSTGKVN HYEGGRELET MKNVDRSVSS EQLLKIVNGN HQVFSRSSNN NWKRLPCSNN
0401: SGLYNIPGST TVPGHSQLDM LSLTNLEESL DKELEEAQER KRLFEIEERN ALKVYRKAQR SLIEANARCA ELYSKREILS AHYGSLIVRD SRLLWPSIHG
0501: ENPETGFHFL NNSTGSIDLA TKTDIAQHSQ LESNHKYNSE YVGSHPPPHS RSGQNLGYSD LGASTSDGLP CGNKQTASRL CSPSSDANIL PDDESFPVDH
0601: ESTEGNPGHQ KENIDQTLGN QNALLLEASL RSKLFDRLGM RAESRGGTCF NEETVIDRGD ERDFGSEGTQ RDNGSPFSEI YLHNDSLEPG ANKLQGSPSE
0701: APVERRSIEE NSLNYQLSID MESHRSSPEN ALLSSVALSG PLFRSTIYHL KVPGSSITSL GPEYILQNKT YSLYSDKRQC RSLTETIVYE KKIGFYTCNL
0801: KVDPSWPLCM YELRGRCNND ECSWQHFKDF SDDSLHQSLH DPDGRVGSSS HQKTHNSSKG SQILDSVFSP TYLVSLDTMK VDSWSYESVL AQRHGQIWCK
0901: HFSACLASSN SLYRNVPAKE NEGRIVVLGN SKTYSSYFRI KHSLMWHIFQ ALSLLSQGLE GDPTSEILWA VYLLIYHAYE GSDGKDMFSY GVKHSSRSYV
1001: IWLMYINSRG QLNDQLIAYD TALSALCNHA SGSIDRNHAS ACILDVLLQM FNLLCISGNV SKAIQRISKL QAPAAVSDDP DFSLMSHILT CLTYSDKCVF
1101: WVCCVYLVIY RKLPDSIIRR LEMEKELLEI EWPTVNLDGD LKQMALRLFD KGMRSVEHGT NNGIQKRPAG LFALNYALFM IAVDELESRR DILKASVQLY
1201: PTCLELKLLA VRMQSNELKD MFSSGFEELL KQEAKEASCI QCIWNQYAEY ALEGGSYDLA RELMSRWYGS VWDVLSHKYK TVRGNEEEGD DNMLESALSD
1301: LNVASDQVDV MFGYLNLSLH NLLQSNWTEA RLAIDQALKA TAPEHFMHCL REHAVFQLIN ELQATGEFSI NLQMRLLNSY LDRASSLPVK EPLSWKFISN
1401: SAEKPRVRKL VTNLLAPVSS ELFVVNVVLE AWHGPSLVPE KLSKQKELVD FVETILGLVP SNYPLALSVS KLLRKEEKQS DSGSSSGIHF WAGLNLASTI
1501: SCAIPVAPEY IWVEAGEIVS DINGFKTRAE RFLKKALSVY PMSVKLWRCY WSLCKSIEER RGIEIEEAAR KKGITLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)