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AT2G39510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.904
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G37460.1); Has 4772 Blast hits to 4753 proteins in 819 species: Archae - 36; Bacteria - 2386; Metazoa - 4; Fungi - 0; Plants - 1228; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).
Protein Annotations
BioGrid:3874eggNOG:ENOG410ITDVeggNOG:ENOG410YBPNEMBL:AC004218EMBL:AK227747EMBL:BT006205EMBL:CP002685
EnsemblPlants:AT2G39510EnsemblPlants:AT2G39510.1entrez:818536GeneID:818536Genevisible:O80638GO:GO:0005886GO:GO:0006810
GO:GO:0006868GO:GO:0015186GO:GO:0016021GO:GO:0022857GO:GO:0044746GO:GO:0048316GO:GO:0098712
Gramene:AT2G39510.1hmmpanther:PTHR31218hmmpanther:PTHR31218:SF18HOGENOM:HOG000237441InParanoid:O80638IntAct:O80638InterPro:IPR000620
InterPro:IPR030184iPTMnet:O80638KEGG:ath:AT2G39510OMA:IAIGCICPANTHER:PTHR31218PaxDb:O80638Pfam:O80638
Pfam:PF00892PhylomeDB:O80638PIR:T00561PRIDE:O80638PRO:PR:O80638ProteinModelPortal:O80638Proteomes:UP000006548
RefSeq:NP_181483.1STRING:3702.AT2G39510.1SUPFAM:0043518TAIR:AT2G39510TMHMM:TMhelixUniGene:At.37164UniProt:O80638
Coordinates (TAIR10) chr2:-:16491358..16493085
Molecular Weight (calculated) 40676.70 Da
IEP (calculated) 9.73
GRAVY (calculated) 0.58
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKTWKPFI TVVSLQFGYA GLSIIAKFAL NQGMSPHVLA SYRHIVATIF IAPFAYFLDR KIRPKMTLSI FFKILLLGLL EPTIDQNLYY TGMKYTSATF
101: TAAMTNVLPA FAFIMAWIFR LEKVNVKKIH SQAKILGTIV TVGGAMLMTV VKGPLIPLPW ANPHDIHQDS SNTGVKQDLT KGASLIAIGC ICWAGFINLQ
201: AITLKSYPVE LSLTAYICFL GSIESTIVAL FIERGNPSAW AIHLDSKLLA AVYGGVICSG IGYYVQGVIM KTRGPVFVTA FNPLSMVIVA ILGSIILAEV
301: MFLGRILGAI VIVLGLYSVL WGKSKDEPSS SFSDMDKELP LSTPQIVLPS KANAKMDTND ASVVISRPNT NESV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)