AT2G39430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance-responsive (dirigent-like protein) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT3G55230.1); Has 728 Blast hits to 728 proteins in 43 species: Archae - 2; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 715; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16463422..16464390 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33763.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.41 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 322 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKALHITIF LFLISSNLLA FINSARLLDE IQPQPQLVPT GQIPTVAPTE AEEEDGTDDN PGLATTTTTA SAVTVPAGPA EATEPLLEFF MHDVLGGSHP 101: SARVVTGIVA QTEVNGIPFS KASNSIFPVD NGVPLVNSNN INSVINPNTA PLLTGLGGAQ TSTVIQNTNG NSNDALSANS LPFVTAGNLP PGAALQHLMF 201: GTITVVDDEL TESHELGSAV IGRAQGFYLA SSLDGTSQTL SLTVLLHGEH DQHDTLDDAI SFFGVHRTAS HASQIAVIGG TGKFEHAKGY AIVETLHNQD 301: NQHITDGQDT ILHFSVYLTY KA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)