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AT2G39370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW7YeggNOG:ENOG410YINIEMBL:AC004218EMBL:CP002685
EnsemblPlants:AT2G39370EnsemblPlants:AT2G39370.1entrez:818522GeneID:818522
Genevisible:O80624GO:GO:0005886GO:GO:0009506Gramene:AT2G39370.1
hmmpanther:PTHR33312hmmpanther:PTHR33312:SF2HOGENOM:HOG000238448InParanoid:O80624
KEGG:ath:AT2G39370OMA:GSHRRSFPaxDb:O80624Pfam:O80624
PhylomeDB:O80624PIR:T00547PRIDE:O80624PRO:PR:O80624
Proteomes:UP000006548RefSeq:NP_181469.1TAIR:AT2G39370UniGene:At.37180
UniProt:O80624
Coordinates (TAIR10) chr2:-:16444280..16445266
Molecular Weight (calculated) 37140.40 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.72
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYLERCDS VEEDYIDMEV TSFTNLVRKT LSNNYPREFE FQMSHLCPLE IDKTTSPADE LFYKGKLLPL HLPPRLQMVQ KILEDYTFDD EFYSTPLATG
101: TVTTPVTSNT PFESCTVSPA ESCQVSKELN PEDYFLEYSD SLEEDDEKKK SWTTKLRLMK QSSLGTKIKA SRAYLRSFFG KTSCSDESSC ASSAARVADE
201: DSVLRYSRVK PFGQIKTERP KKQSNGSVSG SHRRSFSVSM RRQAAKSSNN KSSNSLGFRP LQFLKRSTSS SSEIENSIQG AILHCKQSQQ QKQKQKQYST
301: VNEVGFCSLS ASRIAARDDQ EWAQMFRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)