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AT2G39290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.500
plastid 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phosphatidylglycerolphosphate synthase 1
Curator
Summary (TAIR10)
Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.
Computational
Description (TAIR10)
phosphatidylglycerolphosphate synthase 1 (PGP1); FUNCTIONS IN: CDP-alcohol phosphatidyltransferase activity, CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; INVOLVED IN: phosphatidylinositol biosynthetic process, phospholipid biosynthetic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (InterPro:IPR004570), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: phosphatidylglycerolphosphate synthase 2 (TAIR:AT3G55030.1); Has 7695 Blast hits to 7695 proteins in 2371 species: Archae - 0; Bacteria - 5013; Metazoa - 112; Fungi - 127; Plants - 109; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT2G39290-MONOMERBioGrid:3852EC:2.7.8.5eggNOG:COG0558
eggNOG:KOG1617EMBL:AB048535EMBL:AB058617EMBL:AC004697
EMBL:AK176069EMBL:BT024857EMBL:CP002685EnsemblPlants:AT2G39290
EnsemblPlants:AT2G39290.1entrez:818514GeneID:818514Genevisible:O80952
GO:GO:0005739GO:GO:0006655GO:GO:0008444GO:GO:0008654
GO:GO:0009507GO:GO:0009941GO:GO:0016021GO:GO:0030145
GO:GO:0031969Gramene:AT2G39290.1hmmpanther:PTHR14269hmmpanther:PTHR14269:SF20
HOGENOM:HOG000010898InParanoid:O80952InterPro:IPR000462InterPro:IPR004570
KEGG:00564+2.7.8.5KEGG:ath:AT2G39290KO:K00995MINT:MINT-1577566
OMA:WGLWLIYPaxDb:O80952Pfam:O80952Pfam:PF01066
PhylomeDB:O80952PIR:T02573PRIDE:O80952PRO:PR:O80952
PROSITE:PS00379ProteinModelPortal:O80952Proteomes:UP000006548RefSeq:NP_181461.1
scanprosite:PS00379SMR:O80952STRING:3702.AT2G39290.1TAIR:AT2G39290
tair10-symbols:PGP1tair10-symbols:PGPS1tair10-symbols:PGS1TIGRfam:TIGR00560
TIGRFAMs:TIGR00560TMHMM:TMhelixUniGene:At.20756UniPathway:UPA00084
UniProt:O80952
Coordinates (TAIR10) chr2:+:16407274..16408840
Molecular Weight (calculated) 32160.10 Da
IEP (calculated) 10.88
GRAVY (calculated) 0.22
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRSGLASLI VDVNLRRTLR PSPTFSFPAH LSRCIITSRY SSRTSLRFPI QISRHQHRLS YFSSSSSSEQ SRPTSSSRNS FSGHGQLDSD DNSSPPPSQS
101: SSKVLTLPTV LTLGRVAAVP LLVATFYVDS WWGTTATTSI FIAAAITDWL DGYLARKMRL GSAFGAFLDP VADKLMVAAT LILLCTKPIQ VAELGPLPWL
201: LTVPSIAIIG REITMSAVRE WAASQNGKLL EAVAVNNLGK WKTATQMTAL TILLASRDSN VGWLVASGAG LLYVSAGLSV WSLAVYMRKI WKVLMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)