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AT2G39280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G55020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2058EMBL:CP002685EnsemblPlants:AT2G39280EnsemblPlants:AT2G39280.1entrez:818513ExpressionAtlas:F4IUX8
GeneID:818513Gramene:AT2G39280.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF269InterPro:IPR000195iPTMnet:F4IUX8ncoils:Coil
PaxDb:F4IUX8Pfam:PF00566Pfscan:PS50086PRIDE:F4IUX8PROSITE:PS50086ProteinModelPortal:F4IUX8Proteomes:UP000006548
RefSeq:NP_181460.3SMART:SM00164SMR:F4IUX8STRING:3702.AT2G39280.2SUPFAM:SSF47923TAIR:AT2G39280UniGene:At.24384
UniGene:At.53073UniProt:F4IUX8
Coordinates (TAIR10) chr2:-:16402001..16406650
Molecular Weight (calculated) 84620.70 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.56
Length 749 amino acids
Sequence (TAIR10)
(BLAST)
001: MIADAVSKSD HKRDAYGFSV RPQHVQRYRE YVNIYKEEEV ERSARWSNFL EFHAESGVSP TNGSSENTHV NPSESDKKKE KELNKGAERK DLNADKPGSD
101: LTPGNAREED EVPNREKNVH KVQLWAEIRP SLQAIEDLMS VRVKMKGDST NGEQEAQKLN SLASTDETES SKGVCENDSE DEFYDAERSD PIQDGSSDGT
201: SVSSMSAAAD AASLVSACPW KDELEVLIHG GAPMALRGEL WQAFAGVKKR RVKNYYQNLL AADSLGNDIE QELMQHTDEK GSSTDPLSVV EKWKGQIEKD
301: LPRTFPGHPA LDDDFRNALR RLLTAYARHN PSVGYCQAMN FFAALLLLLM PEENAFWSLT GIIDDYFHDY YSEEMLESQV DQRVLEELLR ERFPKLVHHL
401: DYLGVQVACV TGPWFLTIFI NMLPWESVLR VWDVLLFEGN RVMLFRTALA LMEFYGPALV TTKDIGDAVT LLQSMTGSTF DSSQLVFTAC MGYQNVHESK
501: LQELRSKHRP AVIAAFEERL KGLQAWRDSK DTATKLHNSK QDPNSVLASK ASLSNGSLSR SESGSSYADD IFISLTGDCE IDIFQDLQGQ VLWLKGELHK
601: LLQEKRSALL RAEELEVALM EMVKQDNRRQ LKAKIEQLEQ GVTELRRLVS DKREQESAMI QVLMRMEQEH KVTEDARRLA EQDAATQRYA AEVLQEKYEE
701: AVAALAEMEE RAVMAESMLE ATLQYQSGQV KAQPSPRQLK QDLPVMVSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)