AT2G39280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G55020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16402001..16406650 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84620.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||
| Length | 749 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIADAVSKSD HKRDAYGFSV RPQHVQRYRE YVNIYKEEEV ERSARWSNFL EFHAESGVSP TNGSSENTHV NPSESDKKKE KELNKGAERK DLNADKPGSD 101: LTPGNAREED EVPNREKNVH KVQLWAEIRP SLQAIEDLMS VRVKMKGDST NGEQEAQKLN SLASTDETES SKGVCENDSE DEFYDAERSD PIQDGSSDGT 201: SVSSMSAAAD AASLVSACPW KDELEVLIHG GAPMALRGEL WQAFAGVKKR RVKNYYQNLL AADSLGNDIE QELMQHTDEK GSSTDPLSVV EKWKGQIEKD 301: LPRTFPGHPA LDDDFRNALR RLLTAYARHN PSVGYCQAMN FFAALLLLLM PEENAFWSLT GIIDDYFHDY YSEEMLESQV DQRVLEELLR ERFPKLVHHL 401: DYLGVQVACV TGPWFLTIFI NMLPWESVLR VWDVLLFEGN RVMLFRTALA LMEFYGPALV TTKDIGDAVT LLQSMTGSTF DSSQLVFTAC MGYQNVHESK 501: LQELRSKHRP AVIAAFEERL KGLQAWRDSK DTATKLHNSK QDPNSVLASK ASLSNGSLSR SESGSSYADD IFISLTGDCE IDIFQDLQGQ VLWLKGELHK 601: LLQEKRSALL RAEELEVALM EMVKQDNRRQ LKAKIEQLEQ GVTELRRLVS DKREQESAMI QVLMRMEQEH KVTEDARRLA EQDAATQRYA AEVLQEKYEE 701: AVAALAEMEE RAVMAESMLE ATLQYQSGQV KAQPSPRQLK QDLPVMVSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)