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AT2G39250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.
Computational
Description (TAIR10)
SCHNARCHZAPFEN (SNZ); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G54990.1); Has 4792 Blast hits to 4254 proteins in 261 species: Archae - 0; Bacteria - 31; Metazoa - 43; Fungi - 6; Plants - 4636; Viruses - 12; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
BioGrid:3848EMBL:AC004697EMBL:AY062578EMBL:AY093386
EMBL:AY576276EMBL:CP002685EnsemblPlants:AT2G39250EnsemblPlants:AT2G39250.1
entrez:818510Gene3D:3.30.730.10GeneID:818510Genevisible:Q6PV67
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005730
GO:GO:0006351GO:GO:0007275GO:GO:0009873hmmpanther:PTHR32467
hmmpanther:PTHR32467:SF15HOGENOM:HOG000293136InParanoid:Q6PV67IntAct:Q6PV67
InterPro:IPR001471InterPro:IPR016177InterPro:IPR031112KEGG:ath:AT2G39250
KO:K09284OMA:THNEDEDPANTHER:PTHR32467PaxDb:Q6PV67
Pfam:PF00847Pfam:Q6PV67Pfscan:PS51032PhylomeDB:Q6PV67
PIR:T02577PRIDE:Q6PV67PRO:PR:Q6PV67PROSITE:PS51032
ProteinModelPortal:Q6PV67Proteomes:UP000006548RefSeq:NP_850313.2SMART:SM00380
SMR:Q6PV67STRING:3702.AT2G39250.1SUPFAM:SSF54171TAIR:AT2G39250
tair10-symbols:SNZUniGene:At.27296UniProt:Q6PV67
Coordinates (TAIR10) chr2:-:16389010..16390931
Molecular Weight (calculated) 36442.40 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.59
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDLNLGILS THNEDEDCKV PTSIFIQEED SINPSNDNLS LITFGILKRN VEILPPPPPP PPPPPPSENE LSGPGNEWLD LSSMQRNKQE TLVMKKKSRR
101: GPRSRSSHYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YTAARAYDRA AIRFRGLQAD INFIVDDYKQ DIEKMKNLSK EEFVQSLRRA SASLARGGSK
201: YKNTHMRNDH IHLFQNRGLN AAAAKCNEIR KMEGDIKLGA HSKGNEHNDL ELSLGISSSS KVRILEPADY YMGLNRSVTS LHGKPLPGYL PITEIKPLKT
301: VVASSGFPFI TMINPSSLSL SCFDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)