suba logo
AT2G39190.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
member of ATH subfamily
Computational
Description (TAIR10)
ATATH8; FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G71810.1); Has 8602 Blast hits to 8602 proteins in 1792 species: Archae - 122; Bacteria - 4346; Metazoa - 387; Fungi - 450; Plants - 638; Viruses - 14; Other Eukaryotes - 2645 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0661eggNOG:KOG1235EMBL:AC004697EMBL:AY048299EMBL:BT002715EMBL:CP002685EnsemblPlants:AT2G39190
EnsemblPlants:AT2G39190.1entrez:818504ExpressionAtlas:Q94AB3GeneID:818504Gramene:AT2G39190.1hmmpanther:PTHR10566hmmpanther:PTHR10566:SF44
InterPro:IPR004147InterPro:IPR011009Pfam:PF03109PhylomeDB:Q94AB3Proteomes:UP000006548RefSeq:NP_565901.1SMR:Q94AB3
STRING:3702.AT2G39190.2SUPFAM:SSF56112TAIR:AT2G39190tair10-symbols:ATATH8UniGene:At.12808UniProt:Q94AB3
Coordinates (TAIR10) chr2:+:16350140..16352680
Molecular Weight (calculated) 41682.10 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.06
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVSPSPSC STIPIPLRRT SFAVAELRRL KQRRAIPPVS VGLGHFADVV RNDVDFLKNK IGIGLRWANE AFRVPEVTKS AEELFWLRHL EDHTSQNLKS
101: QSWPQPSYSG LTGVDLFMAD VKALETYAGY FYSLSKMWSR PLPEVYDSQA VADYFNCRPH VVAFRLLEVF SAFTIAAIRL RTSASVKGKS LEASEQIFGM
201: VLKETMLHLG PTFIKVGQSL STRPDIIGTE ISKALSELHD RIPPFPWPEA VKILEGELGG PVESFFSQFS QETVAAASFG QVYRGRTLDG ADVAVKVQRP
301: DLRHAVLRDI YILRLGLGVL RKVAKRENDI RVYADELGMG LAGELDFTLE AANASEFQLT HDFPISGFQK YISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)