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AT2G39050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.531
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1708 Blast hits to 1449 proteins in 222 species: Archae - 0; Bacteria - 47; Metazoa - 514; Fungi - 386; Plants - 615; Viruses - 5; Other Eukaryotes - 141 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX2QeggNOG:ENOG410YRN6EMBL:AC005770EMBL:AF411801
EMBL:AY087909EMBL:AY093795EMBL:CP002685EnsemblPlants:AT2G39050
EnsemblPlants:AT2G39050.1entrez:818491GeneID:818491GO:GO:0005634
GO:GO:0005737GO:GO:0030246GO:GO:0042742GO:GO:0090332
Gramene:AT2G39050.1hmmpanther:PTHR31257hmmpanther:PTHR31257:SF2HOGENOM:HOG000237408
InterPro:IPR000772KEGG:ath:AT2G39050OMA:QFEPHAPPfam:PF14200
Pfscan:PS50231PhylomeDB:Q945P1PIR:E84812ProMEX:Q945P1
PROSITE:PS50231Proteomes:UP000006548RefSeq:NP_565899.1STRING:3702.AT2G39050.1
SUPFAM:SSF50370TAIR:AT2G39050UniGene:At.22599UniProt:Q945P1
Coordinates (TAIR10) chr2:+:16303427..16305336
Molecular Weight (calculated) 35649.70 Da
IEP (calculated) 6.69
GRAVY (calculated) -1.05
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHHHQHHRH HQRDDGEDDR QSFGVPPPHV DAPPQPHGLY QSQPHFDPYA PTPQAPAPYR SETQFEPHAP PPYRSEPYFE TPAPPPSFGH VSHVGHQSPN
101: ESYPPEHHRY GGYQQPSNSL LESHGDHSGV THVAHHSSNQ PQSSSGVYHK PDENRLPDNL AGLAGRATVK VYSKAEPNYN LTIRDGKVIL APADPSDEAQ
201: HWYKDEKYST KVKDADGHPC FALVNKATGE AMKHSVGATH PVHLIRYVPD KLDESVLWTE SKDFGDGYRT IRMVNNTRLN VDAYHGDSKS GGVRDGTTIV
301: LWDWNKGDNQ LWKIFPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)