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AT2G38820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.651
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF506)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 400 Blast hits to 398 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AC007133EMBL:AY059934EMBL:AY081624EMBL:CP002685EnsemblPlants:AT2G38820EnsemblPlants:AT2G38820.1entrez:818464
ExpressionAtlas:Q9SIH9GeneID:818464Gramene:AT2G38820.1hmmpanther:PTHR31579hmmpanther:PTHR31579:SF5HOGENOM:HOG000239757InterPro:IPR006502
KEGG:ath:AT2G38820PANTHER:PTHR31579Pfam:PF04720PhylomeDB:Q9SIH9PIR:G84809Proteomes:UP000006548RefSeq:NP_565896.1
TAIR:AT2G38820TIGRfam:TIGR01615TIGRFAMs:TIGR01615UniGene:At.26599UniProt:Q9SIH9
Coordinates (TAIR10) chr2:+:16222271..16223393
Molecular Weight (calculated) 32418.90 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.46
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSY DAALCKSRWE KSPSCPAGEY EYVDVIMKGE RLLIDIDFKS KFEIARATKT
201: YKSMLQTLPY IFVGKADRLQ KIIVLICKAA KQSLKKKGLH VPPWRRAEYV KSKWLSSHVR VDQNSNGEVK QESVEVIAES VSSIVFGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)