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AT2G38800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant calmodulin-binding protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT3G54570.1); Has 4321 Blast hits to 2381 proteins in 392 species: Archae - 26; Bacteria - 2334; Metazoa - 540; Fungi - 255; Plants - 198; Viruses - 28; Other Eukaryotes - 940 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J12DeggNOG:ENOG410YKQ6EMBL:AC007133EMBL:CP002685EnsemblPlants:AT2G38800EnsemblPlants:AT2G38800.1entrez:818462
GeneID:818462Gramene:AT2G38800.1hmmpanther:PTHR33923hmmpanther:PTHR33923:SF2HOGENOM:HOG000153218InterPro:IPR012417KEGG:ath:AT2G38800
ncoils:CoilOMA:QETHEADPfam:PF07839PhylomeDB:Q9SII1PIR:E84809Proteomes:UP000006548RefSeq:NP_181414.1
SMART:SM01054STRING:3702.AT2G38800.1TAIR:AT2G38800UniGene:At.14405UniGene:At.24680UniGene:At.72541UniProt:Q9SII1
Coordinates (TAIR10) chr2:+:16216999..16218837
Molecular Weight (calculated) 69028.10 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.92
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQRKKTCLT IESSSNLQPE TRFGQEHLKN LGPEMMMMKR TKPRRKLKDN HVSSQSGKSQ ELPKHDLVVK VIGGSPNYMK GTSSSEARKE NKKKFNLSRN
101: QKNQTGSKHD SRYGVNKERS CNKSSSRNGR GLTKAPIFKR CSQRATCSST LKDSKFPEYL MLNHGETFDQ VNGTSVLKVC PYTYCSLNGH LHAAQYPPLK
201: SFISLRRQSL KSQKSVKMEA SEEEFVKMDD LEEKKEFENG NGGSCEVDID SQISETVSEG APRSETDSDD YSDSAEMVIE LKESCLEETL VDDSENEVQE
301: KANRDGDTYL LKESDLEETL VEDSMNQDEG NRDGDADHSG CFDSEVIGII KNSEADIVID ETLIDDSVKD FEDTTNIYGD ANEFGCFNSE VIDMMKNTEA
401: DTAIGETLVD ESMKEIQEKE NKDEDADESS CFVSELIDMI KNSAASDAIE DKDATGEETL KDKAEDCKEV SKGQTEVILM TEENAKVPFN RTRKPCKQEE
501: SGSTISWTII KCKKPVAETE DLREFNPREP NYLPAVMDED AEKVDLKHQD IDERRNSEDW MFDYALQRAV SKLAPARKRK VALLVEAFET VQPHGREPEQ
601: VLSYGRHLQA CN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)