suba logo
AT2G38750.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.500
cytosol 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : annexin 4
Curator
Summary (TAIR10)
Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.
Computational
Description (TAIR10)
annexin 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin 8 (TAIR:AT5G12380.1); Has 2371 Blast hits to 2094 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1728; Fungi - 90; Plants - 415; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioGrid:3799eggNOG:ENOG410XPUNeggNOG:KOG0819EMBL:AC005499EMBL:AF188363EMBL:AY042835EMBL:AY081483
EMBL:AY087194EMBL:CP002685EnsemblPlants:AT2G38750EnsemblPlants:AT2G38750.1entrez:818457Gene3D:1.10.220.10GeneID:818457
Genevisible:Q9ZVJ6GO:GO:0005509GO:GO:0005544GO:GO:0006970GO:GO:0009408GO:GO:0009409GO:GO:0009414
GO:GO:0009506GO:GO:0009651GO:GO:0009737Gramene:AT2G38750.1hmmpanther:PTHR10502hmmpanther:PTHR10502:SF104HOGENOM:HOG000158802
InParanoid:Q9ZVJ6IntAct:Q9ZVJ6InterPro:IPR001464InterPro:IPR018502iPTMnet:Q9ZVJ6KEGG:ath:AT2G38750ncoils:Coil
OMA:VAYRAKDPaxDb:Q9ZVJ6Pfam:PF00191Pfam:Q9ZVJ6PhylomeDB:Q9ZVJ6PIR:H84808PRIDE:Q9ZVJ6
PRINTS:PR00196PRO:PR:Q9ZVJ6ProteinModelPortal:Q9ZVJ6Proteomes:UP000006548RefSeq:NP_181409.1SMART:SM00335SMR:Q9ZVJ6
STRING:3702.AT2G38750.1SUPFAM:SSF47874TAIR:AT2G38750tair10-symbols:ANNAT4UniGene:At.20551UniProt:Q9ZVJ6
Coordinates (TAIR10) chr2:-:16196582..16198431
Molecular Weight (calculated) 36223.40 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.44
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPLELESL TEAISAGMGM GVDENALIST LGKSQKEHRK LFRKASKSFF VEDEERAFEK CHDHFVRHLK LEFSRFNTAV VMWAMHPWER DARLVKKALK
101: KGEEAYNLIV EVSCTRSAED LLGARKAYHS LFDQSMEEDI ASHVHGPQRK LLVGLVSAYR YEGNKVKDDS AKSDAKILAE AVASSGEEAV EKDEVVRILT
201: TRSKLHLQHL YKHFNEIKGS DLLGGVSKSS LLNEALICLL KPALYFSKIL DASLNKDADK TTKKWLTRVF VTRADHSDEM NEIKEEYNNL YGETLAQRIQ
301: EKIKGNYRDF LLTLLSKSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)