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AT2G38560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transcript elongation factor IIS
Curator
Summary (TAIR10)
Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
Computational
Description (TAIR10)
transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1594eggNOG:KOG1105EMBL:AC005499EMBL:AK117557EMBL:AY074322EMBL:AY150517EMBL:CP002685
EnsemblPlants:AT2G38560EnsemblPlants:AT2G38560.1entrez:818438Gene3D:1.10.472.30Gene3D:1.20.930.10GeneID:818438Genevisible:Q9ZVH8
GO:GO:0003677GO:GO:0003746GO:GO:0005634GO:GO:0006351GO:GO:0008270GO:GO:0009739GO:GO:0009845
GO:GO:0009910GO:GO:0010162GO:GO:0034243Gramene:AT2G38560.1hmmpanther:PTHR11477IntAct:Q9ZVH8InterPro:IPR001222
InterPro:IPR003617InterPro:IPR003618InterPro:IPR006289InterPro:IPR016492InterPro:IPR017923KEGG:ath:AT2G38560KO:K03145
OMA:MASDERQPaxDb:Q9ZVH8Pfam:PF01096Pfam:PF07500Pfam:PF08711Pfam:Q9ZVH8Pfscan:PS51133
Pfscan:PS51319Pfscan:PS51321PhylomeDB:Q9ZVH8PIR:E84806PIRSF:PIRSF006704PRO:PR:Q9ZVH8PROSITE:PS00466
PROSITE:PS51133PROSITE:PS51319PROSITE:PS51321ProteinModelPortal:Q9ZVH8Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210RefSeq:NP_181390.1scanprosite:PS00466SMART:SM00440SMART:SM00509SMART:SM00510SMR:Q9ZVH8
STRING:3702.AT2G38560.1SUPFAM:0037100SUPFAM:SSF46942SUPFAM:SSF47676SUPFAM:SSF57783TAIR:AT2G38560tair10-symbols:TFIIS
TIGRfam:TIGR01385TIGRFAMs:TIGR01385UniGene:At.13130UniProt:Q9ZVH8
Coordinates (TAIR10) chr2:+:16134802..16136319
Molecular Weight (calculated) 41981.40 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.64
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MESDLIDLFE GAKKAADAAA LDGVTSSGPE VSQCIDALKQ LKKFPVTYDT LVATQVGKKL RSLAKHPVED IKSVATDLLE IWKKVVIEET AKAKKTEGTN
101: GCKEAKVNKM DVEKPSNPAP VKVQKLQRGD SAKSIKVERK EPDNKVVTGV KIERKVPDIK VTNGTKIDYR GQAVKDEKVS KDNQSSMKAP AKAANAPPKL
201: TAMLKCNDPV RDKIRELLVE ALCRVAGEAD DYERESVNAS DPLRVAVSVE SLMFEKLGRS TGAQKLKYRS IMFNLRDSNN PDLRRRVLTG EISPEKLITL
301: SAEDMASDKR KQENNQIKEK ALFDCERGLA AKASTDQFKC GRCGQRKCTY YQMQTRSADE PMTTYVTCVN CDNHWKFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)