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AT2G38550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane proteins 14C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT3G57280.1); Has 138 Blast hits to 137 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 5; Plants - 115; Viruses - 7; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVSYeggNOG:ENOG4111W5FEMBL:AC005499EMBL:AY035020
EMBL:AY086533EMBL:AY133772EMBL:CP002685EnsemblPlants:AT2G38550
EnsemblPlants:AT2G38550.1entrez:818437GeneID:818437Genevisible:Q9ZVH7
GO:GO:0005739GO:GO:0009507GO:GO:0009536GO:GO:0009706
GO:GO:0009941GO:GO:0016021Gramene:AT2G38550.1hmmpanther:PTHR12668
hmmpanther:PTHR12668:SF19HOGENOM:HOG000070690InterPro:IPR005349KEGG:ath:AT2G38550
ncoils:CoilOMA:EAWKVMLPANTHER:PTHR12668PaxDb:Q9ZVH7
Pfam:PF03647Pfam:Q9ZVH7PhylomeDB:Q9ZVH7PIR:D84806
PRO:PR:Q9ZVH7ProteinModelPortal:Q9ZVH7Proteomes:UP000006548RefSeq:NP_565892.1
STRING:3702.AT2G38550.1TAIR:AT2G38550TMHMM:TMhelixUniGene:At.13129
UniProt:Q9ZVH7
Coordinates (TAIR10) chr2:+:16132178..16134229
Molecular Weight (calculated) 36703.10 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.16
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSIPMELMS IRNPNSTLLY RAHSRPPVKL CAPPRSLLPS RRHFSAPRAV VSYPGIRFGF TSPEVLLNRS VVAFAASHED SGESGVEVGK EKSDIDVEDD
101: TSKEAWKQTL ESFKEQVSKM QSVSSEAYSV NSQKAMTVLK ETSEQLRIQA EKAKEELGTK AKVVSEEGRE YILKAAEESP SDVKEIVEAF ASTEDLKNVS
201: RANDFHVGIP YGLLLLVGGF INFMVSGSIP AIRFGVILGG ALFALSLASL KSHRKGESST KFLKGQMAIV AIIFLRELRL LLSQKSTFLG FFTTLTSGGV
301: LGFYLYKMVV KREKGPTLED GGEDESSDGF VRSEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)