AT2G38510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.914 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16123985..16125445 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52537.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.40 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.65 | ||||||||||||||||||||||||||||||||||||||||
| Length | 486 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVGEEMASL TKIACPIVMT SLLIFSRSII SMWFLSHLGK VELAGGALAM GFGNITGVSV LKGLSVGMDP ICGQAFGAKR WTVLSHTFQK MFCLLIVVSV 101: PIAVTWLNIE PIFLRLGQDP DITKVAKTYM LFFVPELLAQ AMLHPLRTFL RTQGLTSPLT ISAIVSILLH PLFNYVFVVR MRLGVKGVAI AMAFNTMNID 201: VGLLVYTCFS DSLIKPWEGL ALRSLFRGWW PLLSLAAPSA ISVCLEYWWY EIMLFLCGLL GNPKASVAAM GILIQTTGIL YVVPFAISSA IATRVGHALG 301: GGQPTRAQCT TVIGLILAVA YGLAAAVFVT ALRSVWGKMF TDEPEILGLI SAALPILGLC EIGNSPQTAA CGVLTGTARP KDGARVNLCA FYIVGLPVAV 401: TTTFGFKVGF RGLWFGLLSA QMTCLVMMLY TLIRTDWSHQ VKRAEELTSA AADKSHSEDE TVHAEVQDDD DVSSNDLEIG LLQNTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)