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AT2G38500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVYZeggNOG:ENOG410YRMUEMBL:AK117928EMBL:BT006246EMBL:CP002685EnsemblPlants:AT2G38500EnsemblPlants:AT2G38500.1
entrez:818432Gene3D:2.60.120.330GeneID:818432GO:GO:0016021Gramene:AT2G38500.1hmmpanther:PTHR34945hmmpanther:PTHR34945:SF2
HOGENOM:HOG000091090InterPro:IPR027443KEGG:ath:AT2G38500OMA:FSQEMENPhylomeDB:Q8GY13Proteomes:UP000006548RefSeq:NP_181384.2
SUPFAM:SSF51197TAIR:AT2G38500TMHMM:TMhelixUniGene:At.37289UniProt:Q8GY13
Coordinates (TAIR10) chr2:-:16117610..16119041
Molecular Weight (calculated) 40634.50 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.42
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MALMRTRSQL NVSSLTPPPP PPSPIPRARG SRCAASEILT EIIERSIQVP ELTLPESHSG GESCGSRHLI PAEIDFRLLA SRREGSVDRL VRSAREFGAF
101: RVSYHGISGE ELRSLVRESG RVFGVLEGRD TGFHRSVVGN RDEIVWVRSW KERMEWAREY IGPERYRCFS QEMENVADKL EDIARKLGQI MVENSRRPND
201: KKIQRGESVL SVYRYNHENV TEQSPPLPKE RTEEMLHYTL SLHLPAKNCE FRVNSGKGPL SFHADPDTIL VTFGRQLEEW SLGEFKCRQG EIIYHPDAYG
301: SPTSFSVELK CMSLFLSHTS IATTSKTFSL THQIFTAFLL LFFFQCFWIY GSRMAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)