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AT2G38420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 26299 Blast hits to 8886 proteins in 261 species: Archae - 3; Bacteria - 26; Metazoa - 362; Fungi - 517; Plants - 24480; Viruses - 0; Other Eukaryotes - 911 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004683EMBL:AY140078EMBL:BT008752EMBL:CP002685EnsemblPlants:AT2G38420
EnsemblPlants:AT2G38420.1entrez:818423GeneID:818423Genevisible:Q8L6Y7GO:GO:0005739Gramene:AT2G38420.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF316HOGENOM:HOG000115623InParanoid:Q8L6Y7InterPro:IPR002885iPTMnet:Q8L6Y7KEGG:ath:AT2G38420OMA:RIPKFRC
PaxDb:Q8L6Y7Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q8L6Y7Pfscan:PS51375
PhylomeDB:Q8L6Y7PIR:T02503PRIDE:Q8L6Y7PRO:PR:Q8L6Y7PROSITE:PS51375ProteinModelPortal:Q8L6Y7Proteomes:UP000006548
RefSeq:NP_181376.3SMR:Q8L6Y7STRING:3702.AT2G38420.1TAIR:AT2G38420TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.37295
UniProt:Q8L6Y7
Coordinates (TAIR10) chr2:+:16091093..16092454
Molecular Weight (calculated) 51599.80 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.06
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MARSSSWHRM SNFMRKYRKI PHSSFKTKWN ENLKQKYAME ELRSNLLTDS ENASVMRTLL SSFQLHNCEP TPQAYRFVIK TLAKSSQLEN ISSVLYHLEV
101: SEKFDTPESI FRDVIAAYGF SGRIEEAIEV FFKIPNFRCV PSAYTLNALL LVLVRKRQSL ELVPEILVKA CRMGVRLEES TFGILIDALC RIGEVDCATE
201: LVRYMSQDSV IVDPRLYSRL LSSVCKHKDS SCFDVIGYLE DLRKTRFSPG LRDYTVVMRF LVEGGRGKEV VSVLNQMKCD RVEPDLVCYT IVLQGVIADE
301: DYPKADKLFD ELLLLGLAPD VYTYNVYING LCKQNDIEGA LKMMSSMNKL GSEPNVVTYN ILIKALVKAG DLSRAKTLWK EMETNGVNRN SHTFDIMISA
401: YIEVDEVVCA HGLLEEAFNM NVFVKSSRIE EVISRLCEKG LMDQAVELLA HLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)