AT2G38410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS/GAT family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT5G01760.1); Has 42231 Blast hits to 23362 proteins in 1216 species: Archae - 12; Bacteria - 2643; Metazoa - 15006; Fungi - 7319; Plants - 4169; Viruses - 367; Other Eukaryotes - 12715 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16086912..16090047 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72322.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSASATV AVDKATSDLL LGPDWTTNME ICDSVNSLHW QAKDVVKAVK KRLQHKSSRV QLLALTLLET LVKNCGDYLH HQVAEKNILG EMVKIVKKKA 101: DMQVRDKILV MVDSWQQAFG GPEGKYPQYY WAYDELRRSG VEFPRRSPDA SPIITPPVSH PPLRQPQGGY GVPPAGYGVH QAGYGVPQAG YGIPQAGYGV 201: PQAGYGIPQV GYGMPSGSSR RLDEAMATEV EGLSLSSIES MRDVMDLLGD MLQAVDPSDR EAVKDEVIVD LVERCRSNQK KLMQMLTSTG DDELLGRGLD 301: LNDSLQILLA KHDAIASGSP LPVQASGSPL SVQASKPADS SPKSSEAKDS SSIAGSSSPI PATVSTGKSP IDEEYEEEED EFAQLARRHS KPPASVTTDP 401: TSLESHNAAS NALALALPDP PPPVNTTKEQ DMIDLLSITL CTPSTPPAPS SQPSPPPPAG SDQNTHIYPQ PQPRFDSYVA PWAQQQQPQQ PQAQQGYSQH 501: QQHQQQQGYS QPQHSQQQQG YSQLQQPQPQ QGYSQSQPQA QVQMQPSTRP QNPYEYPPPP WASTSANAYY TPRANASASY TDTSALAGRS LQQSNSFPTR 601: AGDPQATSTA SNSGVSVGQK PFVPSYRLFE DLDVFGSADG KHNKPANSSN GSQNLSGSQT QQSMIGGRKM I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)