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AT2G38360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.B4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.B4 (PRA1.B4); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B5 (TAIR:AT5G01640.1); Has 506 Blast hits to 506 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 53; Plants - 299; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
BioGrid:3758eggNOG:COG5130eggNOG:KOG3142EMBL:AC004683EMBL:AK229076EMBL:BT010689EMBL:BT011785
EMBL:CP002685EnsemblPlants:AT2G38360EnsemblPlants:AT2G38360.1entrez:818416GeneID:818416Genevisible:O80915GO:GO:0005768
GO:GO:0005783GO:GO:0005794GO:GO:0005802GO:GO:0005829GO:GO:0010008GO:GO:0016021GO:GO:0016192
Gramene:AT2G38360.1hmmpanther:PTHR19317hmmpanther:PTHR19317:SF14HOGENOM:HOG000238420InParanoid:O80915IntAct:O80915InterPro:IPR004895
KEGG:ath:AT2G38360OMA:DMDSKAGPaxDb:O80915Pfam:O80915Pfam:PF03208PhylomeDB:O80915PIR:T02509
PRIDE:O80915PRO:PR:O80915ProteinModelPortal:O80915Proteomes:UP000006548RefSeq:NP_181370.1STRING:3702.AT2G38360.1TAIR:AT2G38360
tair10-symbols:PRA1.B4TMHMM:TMhelixUniGene:At.24545UniGene:At.64458UniGene:At.66365UniProt:O80915
Coordinates (TAIR10) chr2:-:16069840..16070502
Molecular Weight (calculated) 23671.80 Da
IEP (calculated) 8.05
GRAVY (calculated) 0.52
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)