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AT2G38340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G40340.1); Has 5061 Blast hits to 5054 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5051; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXR8eggNOG:ENOG41103RGEMBL:AC004683EMBL:AY072421EMBL:BT006276EMBL:CP002685EnsemblPlants:AT2G38340
EnsemblPlants:AT2G38340.1entrez:818414Gene3D:3.30.730.10GeneID:818414Genevisible:O80917GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009414GO:GO:0009651GO:GO:0009738GO:GO:0034605GO:GO:0043565GO:GO:0044212
GO:GO:0045893Gramene:AT2G38340.1hmmpanther:PTHR31241hmmpanther:PTHR31241:SF2HOGENOM:HOG000112271InParanoid:O80917InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT2G38340OMA:PENPVCRPaxDb:O80917Pfam:O80917Pfam:PF00847Pfscan:PS51032
PhylomeDB:O80917PIR:T02511PRIDE:O80917PRINTS:PR00367PRO:PR:O80917PROSITE:PS51032ProteinModelPortal:O80917
Proteomes:UP000006548RefSeq:NP_181368.1SMART:SM00380SMR:O80917STRING:3702.AT2G38340.1SUPFAM:SSF54171TAIR:AT2G38340
tair10-symbols:DREB19UniGene:At.37311UniGene:At.74107UniProt:O80917
Coordinates (TAIR10) chr2:-:16067447..16068181
Molecular Weight (calculated) 27371.70 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.92
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKEDNGSKQ SSSASVVSSR RRRRVVEPVE ATLQRWEEEG LARARRVQAK GSKKGCMRGK GGPENPVCRF RGVRQRVWGK WVAEIREPVS HRGANSSRSK
101: RLWLGTFATA AEAALAYDRA ASVMYGPYAR LNFPEDLGGG RKKDEEAESS GGYWLETNKA GNGVIETEGG KDYVVYNEDA IELGHDKTQN PMTDNEIVNP
201: AVKSEEGYSY DRFKLDNGLL YNEPQSSSYH QGGGFDSYFE YFRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)