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AT2G38300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb-like HTH transcriptional regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G40260.1); Has 1661 Blast hits to 1657 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 4; Plants - 1609; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZRTeggNOG:ENOG410YQHFEMBL:AK117689EMBL:BT004973EMBL:CP002685EnsemblPlants:AT2G38300EnsemblPlants:AT2G38300.1
entrez:818410Gene3D:1.10.10.60GeneID:818410GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT2G38300.1hmmpanther:PTHR31314HOGENOM:HOG000090767IntAct:Q8GYE4InterPro:IPR001005InterPro:IPR006447
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT2G38300ncoils:CoilOMA:DSPFRYGPfam:PF00249Pfscan:PS51294
PhylomeDB:Q8GYE4PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_181364.2SMR:Q8GYE4STRING:3702.AT2G38300.1SUPFAM:SSF46689
TAIR:AT2G38300TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.46670UniProt:Q8GYE4
Coordinates (TAIR10) chr2:-:16044175..16045679
Molecular Weight (calculated) 38927.40 Da
IEP (calculated) 9.21
GRAVY (calculated) -1.02
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)