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AT2G38270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CAX-interacting protein 2
Curator
Summary (TAIR10)
Encodes protein homologous to CXIP1. CXIP1 is a PICOT domain containing protein interacts with CAX1, a high capacity calcium transporter. However, CXP2 does not interact with CAX1 and only moderately activates another calcium transporter CAX4.
Computational
Description (TAIR10)
CAX-interacting protein 2 (CXIP2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cation transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: CAX interacting protein 1 (TAIR:AT3G54900.1); Has 5833 Blast hits to 5648 proteins in 1292 species: Archae - 30; Bacteria - 2544; Metazoa - 528; Fungi - 278; Plants - 476; Viruses - 0; Other Eukaryotes - 1977 (source: NCBI BLink).
Protein Annotations
BioGrid:3749EC:3.1.-.-eggNOG:COG0278eggNOG:KOG0911EMBL:AC003028EMBL:AF083698EMBL:AK117441
EMBL:AY086273EMBL:AY157989EMBL:BT004974EMBL:CP002685EnsemblPlants:AT2G38270EnsemblPlants:AT2G38270.1entrez:818407
Gene3D:3.40.30.10GeneID:818407Genevisible:Q8H7F6GO:GO:0006812GO:GO:0009055GO:GO:0009507GO:GO:0009570
GO:GO:0015035GO:GO:0016787GO:GO:0045454GO:GO:0046872GO:GO:0051537Gramene:AT2G38270.1hmmpanther:PTHR10293
hmmpanther:PTHR10293:SF45HOGENOM:HOG000243994InParanoid:Q8H7F6IntAct:Q8H7F6InterPro:IPR002109InterPro:IPR004480InterPro:IPR012336
KEGG:ath:AT2G38270OMA:TSMHEKGPANTHER:PTHR10293PaxDb:Q8H7F6PDB:2LWFPDBsum:2LWFPfam:PF00462
Pfam:Q8H7F6Pfscan:PS51354PhylomeDB:Q8H7F6PIR:T01258PRIDE:Q8H7F6PRO:PR:Q8H7F6PROSITE:PS51354
ProteinModelPortal:Q8H7F6Proteomes:UP000006548RefSeq:NP_565885.1SMR:Q8H7F6STRING:3702.AT2G38270.1SUPFAM:SSF52833TAIR:AT2G38270
tair10-symbols:ATGRX2tair10-symbols:CXIP2TIGRfam:TIGR00365TIGRFAMs:TIGR00365UniGene:At.25559UniGene:At.71438UniProt:Q8H7F6
Coordinates (TAIR10) chr2:-:16031347..16033054
Molecular Weight (calculated) 32207.50 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.15
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)