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AT2G38250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleolus; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G01380.1); Has 3356 Blast hits to 2254 proteins in 222 species: Archae - 0; Bacteria - 69; Metazoa - 1338; Fungi - 313; Plants - 554; Viruses - 7; Other Eukaryotes - 1075 (source: NCBI BLink).
Protein Annotations
BioGrid:3746eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AC003028EMBL:AF453582EMBL:AY271678EMBL:CP002685
EnsemblPlants:AT2G38250EnsemblPlants:AT2G38250.1entrez:818404GeneID:818404Genevisible:O80450GO:GO:0003700GO:GO:0005634
GO:GO:0005730GO:GO:0006351GO:GO:0006355GO:GO:0016592GO:GO:0043565Gramene:AT2G38250.1hmmpanther:PTHR10032
hmmpanther:PTHR10032:SF215HOGENOM:HOG000241002InParanoid:O80450IntAct:O80450InterPro:IPR001005InterPro:IPR017877InterPro:IPR027759
InterPro:IPR027775iPTMnet:O80450KEGG:ath:AT2G38250ncoils:CoilOMA:FPFHDEVPANTHER:PTHR10032PANTHER:PTHR10032:SF215
PaxDb:O80450Pfam:O80450Pfam:PF13837Pfscan:PS50090PIR:T01257PRIDE:O80450PRO:PR:O80450
PROSITE:PS50090ProteinModelPortal:O80450Proteomes:UP000006548RefSeq:NP_181360.1SMART:SM00717SMR:O80450STRING:3702.AT2G38250.1
TAIR:AT2G38250UniGene:At.28319UniProt:O80450
Coordinates (TAIR10) chr2:+:16018384..16019500
Molecular Weight (calculated) 34309.30 Da
IEP (calculated) 7.02
GRAVY (calculated) -1.26
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)