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AT2G38185.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.942
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101VReggNOG:KOG4275EMBL:AK228136EMBL:CP002685EnsemblPlants:AT2G38185EnsemblPlants:AT2G38185.1EnsemblPlants:AT2G38185.2
entrez:818397ExpressionAtlas:Q0WS06Gene3D:3.30.40.10GeneID:818397GO:GO:0008270GO:GO:0016021Gramene:AT2G38185.1
Gramene:AT2G38185.2hmmpanther:PTHR12183hmmpanther:PTHR12183:SF16HOGENOM:HOG000005728InterPro:IPR001841InterPro:IPR013083InterPro:IPR032008
InterPro:IPR032010KEGG:ath:AT2G38185Pfam:PF13920Pfam:PF16040Pfam:PF16041Pfscan:PS50089PhylomeDB:Q0WS06
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_565884.2RefSeq:NP_973631.1SMART:SM00184SMR:Q0WS06STRING:3702.AT2G38185.4
SUPFAM:SSF57850TAIR:AT2G38185TMHMM:TMhelixUniGene:At.73935UniProt:Q0WS06
Coordinates (TAIR10) chr2:+:16000155..16002699
Molecular Weight (calculated) 49060.60 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.13
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSAPSPSSL DFELSPPVLV TMTSTSSSAS DNVEGADDDA NTHGIFNWRD FSSCWRVSES NLYCFSLALL IWFFASFILI ENLYGPKNVW LGPSSSILVE
101: PSSIFVKSIK VKVLDYSEPG LQLYGFYRTP ALDCFVNWSE SRVLSISHES YKGWPYYLNS GSLLNITYTV KPQGSAVQLV VDEGHQGVPQ SVLNDPAYRY
201: NVWSWNLIEG SGMIQLEIRK SSSYYLAVAN LKSKDVEVEL NIDVKAVLYD TKQSFYNCNF SNGECTFNAM SLVGNSVVVT SPAASQGVSI EDEWYIRFSY
301: QPREIAYVIG TGVVICFMLV AIQFCNRFQC SGGEGHLTED DSARTRLLAD KDDDGSSMGS CDDSYANDDA DLEEFMGNDG EASNRSRRLC AICFDVPRDC
401: FFLPCGHSVS CYECGTTMQE ADGSCPICRR KMKKVKRIYT V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)