AT2G38180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SGNH hydrolase-type esterase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT3G11210.1); Has 749 Blast hits to 745 proteins in 289 species: Archae - 0; Bacteria - 287; Metazoa - 79; Fungi - 158; Plants - 167; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15997187..15998751 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35407.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 312 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGPVRPQIV LFGSSIVQYS FTDRGWGATL ADLYSRTADI ILRGYAGWNS RFALKVLHQV FPKDAVIQPS LVIVYFGGND STHPHPSGHG PHVPLSEFIE 101: NMRKIGEHLL SLSDKTRVIF LTPPPMNEKQ IEIVFGDAIK GRSNELCRPY AEELLNLCRE INVKGIDIWT AIQQQDDWLN SCFTDGIHFT AKASEIVVKE 201: ILKVLRGADW KPSLYWKSLP VEFPFDFDAP NSISLHDLEL TRNNHFESPH LVSLCEQELT RNEQLEPPHP VSLCDHELTR NEQLEPPHPV SLCDHELTQN 301: EQLEPPQPTA RL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)