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AT2G38120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.500
plasma membrane 0.500
ASURE: golgi,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
Computational
Description (TAIR10)
AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
BioGrid:3734eggNOG:COG0814eggNOG:KOG1303EMBL:AC003028EMBL:AY054488EMBL:AY087092EMBL:AY093300
EMBL:CP002685EMBL:X98772EnsemblPlants:AT2G38120EnsemblPlants:AT2G38120.1entrez:818390GeneID:818390Genevisible:Q96247
GO:GO:0001736GO:GO:0003333GO:GO:0005768GO:GO:0005794GO:GO:0005886GO:GO:0009624GO:GO:0009734
GO:GO:0009926GO:GO:0009958GO:GO:0009986GO:GO:0010011GO:GO:0010311GO:GO:0010328GO:GO:0015171
GO:GO:0015293GO:GO:0016021GO:GO:0048765GO:GO:0048829GO:GO:0060919Gramene:AT2G38120.1hmmpanther:PTHR22950
hmmpanther:PTHR22950:SF256HOGENOM:HOG000238482InParanoid:Q96247InterPro:IPR013057KEGG:ath:AT2G38120KO:K13946OMA:CYQCKPA
PaxDb:Q96247Pfam:PF01490Pfam:Q96247PhylomeDB:Q96247PIR:T01244PRIDE:Q96247PRO:PR:Q96247
ProteinModelPortal:Q96247Proteomes:UP000006548RefSeq:NP_565882.1STRING:3702.AT2G38120.1TAIR:AT2G38120tair10-symbols:AUX1tair10-symbols:MAP1
tair10-symbols:PIR1tair10-symbols:WAV5TCDB:2.A.18.1.1TMHMM:TMhelixUniGene:At.24295UniProt:Q96247
Coordinates (TAIR10) chr2:+:15973493..15976792
Molecular Weight (calculated) 54062.70 Da
IEP (calculated) 8.44
GRAVY (calculated) 0.44
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEGVEAIVA NDNGTDQVNG NRTGKDNEEH DGSTGSNLSN FLWHGGSVWD AWFSCASNQV AQVLLTLPYS FSQLGMLSGI VLQIFYGLLG SWTAYLISVL
101: YVEYRARKEK EGKSFKNHVI QWFEVLDGLL GSYWKALGLA FNCTFLLFGS VIQLIACASN IYYINDHLDK RTWTYIFGAC CATTVFIPSF HNYRIWSFLG
201: LGMTTYTAWY LAIASIIHGQ AEGVKHSGPT KLVLYFTGAT NILYTFGGHA VTVEIMHAMW KPQKFKYIYL MATLYVFTLT IPSAAAVYWA FGDALLDHSN
301: AFSLMPKNAW RDAAVILMLI HQFITFGFAC TPLYFVWEKV IGMHDTKSIC LRALARLPVV IPIWFLAIIF PFFGPINSAV GALLVSFTVY IIPSLAHMLT
401: YRSASARQNA AEKPPFFMPS WTAMYVLNAF VVVWVLIVGF GFGGWASVTN FVRQVDTFGL FAKCYQCKPA AAAAHAPVSA LHHRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)