suba logo
AT2G38110.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.783
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycerol-3-phosphate acyltransferase 6
Curator
Summary (TAIR10)
Encodes a protein with glycerol-3-phosphate acyltransferase activity.
Computational
Description (TAIR10)
glycerol-3-phosphate acyltransferase 6 (GPAT6); CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1); Has 444 Blast hits to 431 proteins in 52 species: Archae - 0; Bacteria - 47; Metazoa - 20; Fungi - 0; Plants - 368; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:3733BRENDA:2.3.1.198BRENDA:3.1.3.B13EC:2.3.1.198eggNOG:ENOG410IINDeggNOG:ENOG4110PXUEMBL:AC003028
EMBL:AY062721EMBL:AY114657EMBL:CP002685EnsemblPlants:AT2G38110EnsemblPlants:AT2G38110.1entrez:818389Gene3D:3.40.50.1000
GeneID:818389Genevisible:O80437GO:GO:0008654GO:GO:0009908GO:GO:0010143GO:GO:0016020GO:GO:0016021
GO:GO:0016311GO:GO:0016791GO:GO:0090447Gramene:AT2G38110.1gramene_pathway:2.3.1.15gramene_pathway:2.3.1.51gramene_pathway:PWY-5667
gramene_pathway:PWY0-1319gramene_pathway:TRIGLSYN-PWYhmmpanther:PTHR15486hmmpanther:PTHR15486:SF20HOGENOM:HOG000237722InParanoid:O80437InterPro:IPR002123
InterPro:IPR023214KEGG:ath:AT2G38110KO:K13508ncoils:CoilOMA:YKLLDPYPaxDb:O80437Pfam:O80437
Pfam:PF01553PhylomeDB:O80437PIR:T01243PRIDE:O80437PRO:PR:O80437ProteinModelPortal:O80437Proteomes:UP000006548
RefSeq:NP_181346.1SMART:SM00563STRING:3702.AT2G38110.1SUPFAM:0039877SUPFAM:SSF56784TAIR:AT2G38110tair10-symbols:ATGPAT6
tair10-symbols:GPAT6TMHMM:TMhelixUniGene:At.21177UniProt:O80437
Coordinates (TAIR10) chr2:-:15952816..15955364
Molecular Weight (calculated) 56142.10 Da
IEP (calculated) 10.02
GRAVY (calculated) 0.03
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAQEKRRRF EQISKCDVKD RSNHTVAADL DGTLLISRSA FPYYFLVALE AGSLLRALIL LVSVPFVYLT YLTISETLAI NVFVFITFAG LKIRDVELVV
101: RSVLPRFYAE DVRPDTWRIF NTFGKRYIIT ASPRIMVEPF VKTFLGVDKV LGTELEVSKS GRATGFTRKP GILVGQYKRD VVLREFGGLA SDLPDLGLGD
201: SKTDHDFMSI CKEGYMVPRT KCEPLPRNKL LSPIIFHEGR LVQRPTPLVA LLTFLWLPVG FVLSIIRVYT NIPLPERIAR YNYKLTGIKL VVNGHPPPPP
301: KPGQPGHLLV CNHRTVLDPV VTAVALGRKI SCVTYSISKF SELISPIKAV ALTRQREKDA ANIKRLLEEG DLVICPEGTT CREPFLLRFS ALFAELTDRI
401: VPVAINTKQS MFNGTTTRGY KLLDPYFAFM NPRPTYEITF LKQIPAELTC KGGKSPIEVA NYIQRVLGGT LGFECTNFTR KDKYAMLAGT DGRVPVKKEK
501: T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)