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AT2G38050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.709
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
Curator
Summary (TAIR10)
Similar to mammalian steroid-5-alpha-reductase. Involved in the brassinolide biosynthetic pathway.
Computational
Description (TAIR10)
DE-ETIOLATED 2 (DET2); FUNCTIONS IN: sterol 5-alpha reductase activity; INVOLVED IN: response to light stimulus, brassinosteroid homeostasis, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system, integral to membrane, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), 3-oxo-5-alpha-steroid 4-dehydrogenase (InterPro:IPR016636); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT5G16010.1); Has 1601 Blast hits to 1599 proteins in 320 species: Archae - 0; Bacteria - 193; Metazoa - 442; Fungi - 195; Plants - 239; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38050-MONOMERBioCyc:MetaCyc:AT2G38050-MONOMERBioGrid:3727EC:1.3.1.22
eggNOG:ENOG410XS6PeggNOG:KOG1638EMBL:AY045926EMBL:AY079337
EMBL:CP002685EMBL:U53860EnsemblPlants:AT2G38050EnsemblPlants:AT2G38050.1
entrez:818383GeneID:818383Genevisible:Q38944GO:GO:0003865
GO:GO:0005737GO:GO:0009917GO:GO:0010268GO:GO:0016021
GO:GO:0016132GO:GO:0047751GO:GO:0050213GO:GO:0055114
Gramene:AT2G38050.1gramene_pathway:1.3.99.-gramene_pathway:PWY-2582gramene_pathway:PWY-2602
gramene_pathway:PWY-699gramene_plant_reactome:1119456gramene_plant_reactome:6875031gramene_plant_reactome:6876901
hmmpanther:PTHR10556hmmpanther:PTHR10556:SF37HOGENOM:HOG000050133InParanoid:Q38944
IntAct:Q38944InterPro:IPR001104InterPro:IPR016636KEGG:00140+1.3.1.22
KEGG:00905+1.3.1.22KEGG:ath:AT2G38050KO:K09591OMA:RGWFFPL
PaxDb:Q38944Pfam:PF02544Pfam:Q38944Pfscan:PS50244
PhylomeDB:Q38944PIR:C84800PIRSF:PIRSF015596PRIDE:Q38944
PRO:PR:Q38944PROSITE:PS50244ProteinModelPortal:Q38944Proteomes:UP000006548
Reactome:R-ATH-193048RefSeq:NP_181340.1STRING:3702.AT2G38050.1TAIR:AT2G38050
tair10-symbols:ATDET2tair10-symbols:DET2tair10-symbols:DWF6TMHMM:TMhelix
UniGene:At.22739UniGene:At.66437UniGene:At.74183UniPathway:UPA00381
UniProt:Q38944
Coordinates (TAIR10) chr2:-:15921303..15922176
Molecular Weight (calculated) 30636.40 Da
IEP (calculated) 10.05
GRAVY (calculated) 0.13
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEIADKTFF RYCLLTLIFA GPPTAVLLKF LQAPYGKHNR TGWGPTVSPP IAWFVMESPT LWLTLLLFPF GRHALNPKSL LLFSPYLIHY FHRTIIYPLR
101: LFRSSFPAGK NGFPITIAAL AFTFNLLNGY IQARWVSHYK DDYEDGNWFW WRFVIGMVVF ITGMYINITS DRTLVRLKKE NRGGYVIPRG GWFELVSCPN
201: YFGEAIEWLG WAVMTWSWAG IGFFLYTCSN LFPRARASHK WYIAKFKEEY PKTRKAVIPF VY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)