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AT2G38000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.557
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chaperone protein dnaJ-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chaperone protein dnaJ-related; Has 1004 Blast hits to 976 proteins in 392 species: Archae - 24; Bacteria - 688; Metazoa - 92; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR3KeggNOG:KOG2813EMBL:AY080880EMBL:AY114047EMBL:CP002685EnsemblPlants:AT2G38000EnsemblPlants:AT2G38000.1
entrez:818378GeneID:818378Gramene:AT2G38000.1hmmpanther:PTHR15852hmmpanther:PTHR15852:SF20HOGENOM:HOG000070875IntAct:Q9SH87
InterPro:IPR001305KEGG:ath:AT2G38000OMA:RVTMAHRPhylomeDB:Q9SH87PIR:G84799Proteomes:UP000006548RefSeq:NP_181336.1
SMR:Q9SH87STRING:3702.AT2G38000.1SUPFAM:SSF57938TAIR:AT2G38000UniGene:At.14638UniGene:At.66348UniProt:Q9SH87
Coordinates (TAIR10) chr2:-:15903315..15905276
Molecular Weight (calculated) 46244.90 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.31
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKPLLSGSE KTNESERLDS YQYLQRNSSS ARNPSFAGAG VVTVEEIRTA SAVSSDPPSL YPPVIKTPVS LPIPQAIGYP SASGAGHELQ QRQFLDEIEI
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)