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AT2G37990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosome biogenesis regulatory protein (RRS1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 425 Blast hits to 423 proteins in 207 species: Archae - 1; Bacteria - 2; Metazoa - 151; Fungi - 137; Plants - 58; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5225eggNOG:KOG1765EMBL:AK222003EMBL:AY088030EMBL:CP002685EnsemblPlants:AT2G37990EnsemblPlants:AT2G37990.1
entrez:818377ExpressionAtlas:Q0WWN4ExpressionAtlas:Q9SH88GeneID:818377Genevisible:Q9SH88GO:GO:0005730GO:GO:0042254
Gramene:AT2G37990.1hmmpanther:PTHR17602HOGENOM:HOG000017552InParanoid:Q9SH88InterPro:IPR007023KEGG:ath:AT2G37990KO:K14852
OMA:KRRYGYDPANTHER:PTHR17602PaxDb:Q9SH88Pfam:PF04939Pfam:Q9SH88PhylomeDB:Q9SH88PIR:F84799
PRIDE:Q0WWN4PRIDE:Q9SH88PRO:PR:Q9SH88Proteomes:UP000006548RefSeq:NP_565878.1STRING:3702.AT2G37990.1TAIR:AT2G37990
UniGene:At.14638UniGene:At.66348UniProt:Q0WWN4UniProt:Q9SH88
Coordinates (TAIR10) chr2:+:15900713..15903028
Molecular Weight (calculated) 35532.60 Da
IEP (calculated) 10.56
GRAVY (calculated) -1.03
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTEMETEQI YQVDVGNLLA FNPNHRFPSA PSSRGELVKE ILTEGTKLVQ EIANKLFNFP STETNDGPIV QLPPPTTKLP REKHIPRPKP PTKWEEFALK
101: KGIQKRKKEK VVWDEQTNQF KRRHGYDRVN DDNDVPIIEA KESDEPGVDP FAKRLDDKKK RVGKQEKNRL QNLKAAEKAG ALPSHVQLAA TSLPISGTKA
201: QPKKIGKDEL GDVAGLAATS TASGGKFDKK LPGEKPPKKQ GKHHKYLPVV SGRGDVNAEK EQTNNVLSKI FSKHSHEILN VGKAINMYNV KKEKKKSGRS
301: DKLKPKKDIT KKPANKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)