suba logo
AT2G37900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 0.848
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G53960.1); Has 7031 Blast hits to 6882 proteins in 1319 species: Archae - 0; Bacteria - 3384; Metazoa - 508; Fungi - 445; Plants - 2220; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:CP002685EnsemblPlants:AT2G37900EnsemblPlants:AT2G37900.1entrez:818366GeneID:818366
Genevisible:P0CI03GO:GO:0005215GO:GO:0006857GO:GO:0016021Gramene:AT2G37900.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF79
HOGENOM:HOG000237400InParanoid:P0CI03InterPro:IPR000109InterPro:IPR018456InterPro:IPR020846KEGG:ath:AT2G37900OMA:ANICVFV
PANTHER:PTHR11654PaxDb:P0CI03Pfam:P0CI03Pfam:PF00854PIR:E84798PRIDE:P0CI03PRO:PR:P0CI03
PROSITE:PS01022ProteinModelPortal:P0CI03Proteomes:UP000006548RefSeq:NP_181326.1scanprosite:PS01022SMR:P0CI03STRING:3702.AT2G37900.1
SUPFAM:SSF103473TAIR:AT2G37900TMHMM:TMhelixUniGene:At.53061UniProt:P0CI03
Coordinates (TAIR10) chr2:-:15864396..15866408
Molecular Weight (calculated) 64310.10 Da
IEP (calculated) 9.04
GRAVY (calculated) 0.36
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHKNIGAEV LQDTYDDQQK WVLDSSLDSR GRVPLRARTG AWRAALFIIA IEFSERLSYF GLATNLVVYL TTILNQDLKM AIRNVNYWSG VTTLMPLLGG
101: FIADAYLGRY ATVLVATTIY LMGLVLLTMS WFIPGLKPCH QEVCVEPRKA HEVAFFIAIY LISIGTGGHK PSLESFGADQ FDDDHVEERK MKMSFFNWWN
201: VSLCAGILTA VTAVAYIEDR VGWGVAGIIL TVVMAISLII FFIGKPFYRY RTPSGSPLTP ILQVFVAAIA KRNLPYPSDP SLLHEVSKTE FTSGRLLCHT
301: EHLKFLDKAA IIEDKNPLAL EKQSPWRLLT LTKVEETKLI INVIPIWFST LAFGICATQA STFFIKQAIT MDRHIGGFTV PPASMFTLTA LTLIISLTVY
401: EKLLVPLLRS ITRNQRGINI LQRIGTGMIF SLITMIIAAL VEKQRLDRTN NNKPMSVIWL APQFMVIGFA DAFTLVGLQE YFYHQVPDSM RSLGIAFYLS
501: VIGAASFLNN LLITAVDTLA ENFSGKSWFG KDLNSSRLDR FYWFLAGVIA ANICVFVIVA KRCPYKSVQP SQGLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)