AT2G37860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3411) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 533 Blast hits to 494 proteins in 88 species: Archae - 2; Bacteria - 54; Metazoa - 55; Fungi - 24; Plants - 316; Viruses - 7; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15856952..15858351 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37351.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD 101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI 201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE 301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)