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AT2G37860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3411)
Curator
Summary (TAIR10)
Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae
Computational
Description (TAIR10)
LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 533 Blast hits to 494 proteins in 88 species: Archae - 2; Bacteria - 54; Metazoa - 55; Fungi - 24; Plants - 316; Viruses - 7; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE1SeggNOG:ENOG410YE28EMBL:AK316808EMBL:AK318956EMBL:AY081345EMBL:BT002153EMBL:CP002685
EnsemblPlants:AT2G37860EnsemblPlants:AT2G37860.1EnsemblPlants:AT2G37860.2EnsemblPlants:AT2G37860.3entrez:818362ExpressionAtlas:B9DFK5GeneID:818362
Genevisible:B9DFK5GO:GO:0000302GO:GO:0009507GO:GO:0009536GO:GO:0009648GO:GO:0009941GO:GO:0016020
GO:GO:0016021GO:GO:0031969GO:GO:0048366hmmpanther:PTHR31038hmmpanther:PTHR31038:SF1HOGENOM:HOG000242221InParanoid:B9DFK5
InterPro:IPR021825KEGG:ath:AT2G37860OMA:RIGTFFYPaxDb:B9DFK5Pfam:PF11891PhylomeDB:B9DFK5PRIDE:B9DFK5
PRO:PR:B9DFK5Proteomes:UP000006548RefSeq:NP_001031506.1RefSeq:NP_850287.1RefSeq:NP_850288.2STRING:3702.AT2G37860.3TAIR:AT2G37860
tair10-symbols:LCD1TMHMM:TMhelixUniGene:At.14627UniProt:Q8RXC6
Coordinates (TAIR10) chr2:+:15856952..15858351
Molecular Weight (calculated) 37351.90 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.05
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)